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  1. Cui, TX; Mowrey, D; Bondarenko, V; Tillman, T; Ma, DJ; Landrum, E; Perez-Aguilar, JM; He, J; Wang, W; Saven, JG; Eckenhoff, RG; Tang, P; Xu, Y, "NMR structure and dynamics of a designed water-soluble transmembrane domain of nicotinic acetylcholine receptor", Biochimica Et Biophysica Acta-Biomembranes, vol. 1818, (2012), P. 617, "10.1016/j.bbamem.2011.11.02 "
  2. Ferrer, MCC; Hickok, NJ; Eckmann, DM; Composto, RJ, "Antibacterial biomimetic hybrid films", Soft Matter, vol. 8, (2012), 2423., "10.1039/c2sm06969 "
  3. Gao, T; Hu, HH; Castaneda, PP, "Shape Dynamics and Rheology of Soft Elastic Particles in a Shear Flow", Physical Review Letters, vol. 108, (2012), p. 058302, "10.1103/PhysRevLett.108.05830 "
  4. Kamps A, Fryd M, Park SJ, "Hierarchical Self-Assembly of Amphiphilic Semiconducting Block-copolymers into Isolated, Bundled, and Branched Nanofibers", ACS Nano, vol. 6, (2012), p.2844., " 10.1021/nn300385p"
  5. Koo, J; Park, J; Tronin, A; Zhang, RL; Krishnan, V; Strzalka, J; Kuzmenko, I; Fry, HC; Therien, MJ; Blasie, JK, "Acentric 2-D Ensembles of D-br-A Electron-Transfer Chromophores via Vectorial Orientation within Amphiphilic n-Helix Bundle Peptides for Photovoltaic Device Applications", Langmuir, vol. 28, (2012), p. 3227., "10.1021/la205002 "
  6. Koo, J; Park, J; Tronin, A; Zhang, RL; Krishnan, V; Strzalka, J; Kuzmenko, I; Fry, HC; Therien, MJ; Blasie, JK, "Acentric 2-D Ensembles of D-br-A Electron-Transfer Chromophores via Vectorial Orientation within Amphiphilic n-Helix Bundle Peptides for Photovoltaic Device Applications", Langmuir, vol. 28, (2012), p. 3227., "10.1021/la205002 "
  7. Lu, Y; Lerner, MB; Qi, ZJ; Mitala, JJ; Lim, JH; Discher, BM; Johnson, ATC, "Graphene-protein bioelectronic devices with wavelength-dependent photoresponse", Applied Physics Letters, vol. 100, (2012), "10.1063/1.367802 " 
  8. Park, J; Deria, P; Therien, MJ, "Dynamics and Transient Absorption Spectral Signatures of the Single-Wall Carbon Nanotube Electronically Excited Triplet State", Journal of The American Chemical Society, vol. 133, (2011), p. 17156., "10.1021/ja207947 "
  9. Rosario-Canales, MR; Deria, P; Therien, MJ; Santiago-Aviles, JJ, "Composite Electronic Materials Based on Poly(3,4-propylenedioxythiophene) and Highly Charged Poly(aryleneethynylene)-Wrapped Carbon Nanotubes for Supercapacitors", ACS Applied Materials & Interfaces, vol. 4, (2012), p. 102., "10.1021/am201041 "
  10. Sun, JEP; Vranic, J; Composto, RJ; Streu, C; Billings, PC; Bennett, JS; Weiself, JW; Litvinov, RI, "Bimolecular integrin-ligand interactions quantified using peptide-functionalized dextran-coated microparticles", Integrative Biology, vol. 4, (2012), p. 84., "10.1039/c1ib00085 "
  11. Wang, Y; Santiago-Aviles, JJ, "A Review on Synthesis and Characterization of Lead Zirconate Titanate Nanofibers through Electrospinning", Integrated Ferroelectrics, vol. 126, (2011), p. 60., "10.1080/10584587.2011.57498 "
  1. Beausang, J. F., Y. E. Goldman, and P. C. Nelson, Changepoint Analysis for Single-Molecule Polarized Total Internal Reflection Fluorescence Microscopy Experiments,  Meth. Enzymol. 487, 431-463, (2011).
  2. Conklin, D; Park, TH; Nanayakkara, S; Therien, MJ; Bonnell, DA, "Controlling Polarization Dependent Reactions to Fabricate Multi-Component Functional Nanostructures", Advanced Functional Materials, vol. 21, (2011), p. 4712., "10.1002/adfm.20110167 "
  3. Gao, T; Hu, HH; Castaneda, PP, "Rheology of a suspension of elastic particles in a viscous shear flow", Journal Of Fluid Mechanics, vol. 687, (2011), p. 209., "10.1017/jfm.2011.34 "
  4. Goldsmith, BR; Mitala, JJ; Josue, J; Castro, A; Lerner, MB; Bayburt, TH; Khamis, SM; Jones, RA; Brand, JG; Sligar, SG; Luetje, CW; Gelperin, A; Rhodes, PA; Discher, BM; Johnson, ATC, "Biomimetic Chemical Sensors Using Nanoelectronic Readout of Olfactory Receptor Proteins", ACS Nano, vol. 5, (2011), p. 5408., "10.1021/nn200489 "
  5. Kang, Y. K., P. M. Iovine, and M. J. Therien, Electron Transfer Reactions of Rigid, Cofacially Compressed, π-Stacked Porphyrin-Bridge-Quinone Systems, Coord. Chem. Rev., 255, 804-824 (2011).
  6. Kathan-Galipeau, K; Nanayakkara, S; O'Brian, PA; Nikiforov, M; Discher, BM; Bonnell, DA, "Direct Probe of Molecular Polarization in De Novo Protein-Electrode Interfaces", ACS Nano, vol. 5, (2011), p. 4835., "10.1021/nn200887 " 
  7. Lebedeva, NV; Schmidt, RD; Concepcion, JJ; Brennaman, MK; Stanton, IN; Therien, MJ; Meyer, TJ; Forbes, MDE, "Structural and pH Dependence of Excited State PCET Reactions involving Reductive Quenching of the MLCT Excited State of [Ru-II(bpy)(2)(bpz)](2+) by Hydroquinones", Journal Of Physical Chemistry A, vol. 115, (2011), p. 3346., "10.1021/jp200381 "
  8. Park, J; Deria, P; Therien, MJ, "Dynamics and Transient Absorption Spectral Signatures of the Single-Wall Carbon Nanotube Electronically Excited Triplet State", Journal Of The American Chemical Society, vol. 133, (2011), p. 17156., "10.1021/ja207947 "
  9. Raj, R; Purohit, PK, "Phase boundaries as agents of structural change in macromolecules", Journal Of The Mechanics And Physics Of Solids, vol. 59, (2011), p. 2044., "10.1016/j.jmps.2011.07.00 "
  10. Sen, S; Tewari, M; Zajac, A; Barton, E; Sweeney, HL; Discher, DE, "Upregulation of paxillin and focal adhesion signaling follows Dystroglycan Complex deletions and promotes a hypertensive state of differentiation", European Journal Of Cell Biology, vol. 90, (2011), p. 249., "10.1016/j.ejcb.2010.06.00 "
  11. Sun, YJ; Goldman, YE, Lever-Arm Mechanics of Processive Myosins, Biophysical Journal, vol. 101, (2011), p. 1., "10.1016/j.bpj.2011.05.02 "
  12. Van Vugt, L., K, B. Piccione, C.H. Cho, C. Aspetti, A. Wirshbha ,and R. Agarwal, Variable Temperature Spectroscopy of as-grown and Passivated CdS Nanowire Optical Waveguide Cavities, J. Physical. Chemistry A 115, 3827–3833 (2011).
  1. Arsenault, M. E., P. K. Purohit, Y. E. Goldman, H. Shuman, and H. H. Bau, Comparison of Brownian-Dynamics-Based Estimates of Polymer Tension with Direct Force Measurements, Phys. Rev. E. 82, 051923 (2010).
  2. Banerjee, P., D. Conklin, S. Nanayakkara, T.-H. Park, M. J. Therien, and D. A. Bonnell. Plasmon Induced Electrical Conduction in Molecular Devices. ACS Nano., 2010, 4, 1019-1025.
  3. Brown, A.E., and D.E. Discher. Conformational Changes and Signaling in Cell and Matrix Physics. Current Biology, 2010, 19: R781–R789 .
  4. Buxboim, A., I. Ivanova, and D.E. Discher. Matrix Elasticity, Cytoskeletal Forces, and Physics of the Nucleus:  how deeply do cells ‘feel’ outside and in? Journal of Cell Science, 2010, 123: 297-308.
  5. Chen, X.-J.; Sanchez-Gaytan, B. L.; Hayik, S. E. N.; Fryd, M.; Wayland, B. B.; Park, S. -J., Self-Assembled Hybrid Structures of DNA Block-copolymers and Nanoparticles with Enhanced DNA Binding Properties, Small 6, 2256–2260 (2010).
  6. Davis, B., J. Sun, J. Schotland, and S. Carney. Inverse Scattering for Broadband Near-Field Scanning Optical Microscopy. J. Mod. Opt. 57, 809-815 (2010).
  7. Deria, P., L. E. Sinks, T. H. Park, D. M. Tomezsko, M. J. Brukman, D. A. Bonnell, and M. J. Therien, Phase Transfer Catalysts Drive Diverse Organic Solvent Solubility of Single-Walled Carbon Nanotubes Helically Wrapped by Ionic, Semiconducting Polymers, Nano Letters 10, 4192-4199 (2010).
  8. Drew, M. E., A. Chworos, E. Oroudjev, H. Hansma, and Y. Yamakoshi. A Tripod Molecular Tip for Single Molecule Ligand Receptor Force Spectroscopy by AFM. Langmuir 26, 7117–7125 (2010).
  9. Krishnan, V., J. Strzalka, J. Liu, C. Liu, I. Kuzmenko, T. Gog, and J. K. Blasie. Interferometric Enhancement of X-ray Reflectivity from Unperturbed Langmuir Monolayers at the Liquid-Gas Interface.  Phys. Rev. E, 2010, 81(2), 021604 .
  10. Liu, J., D.S. Grierson, J., Moldovan, N., Notbohm, S. Li, P. Jaroenapibal, S.D. O’Connor, A.V. Sumant, K.T. Turner, R.W. Carpick, J.A. Carlisle, N. Neelakantan and N. Moldovan. Preventing Nanoscale Wear of Atomic Force Microscopy Tips Through the Use of Monolithic Ultrananocrystalline Diamond Probes, Small. 6, 1140–1149 (2010)
  11. Lu, Y., B.R. Goldsmith, N.J. Kybert, A.T. C. Johnson, DNA-decorated graphene chemical sensors, Applied Physics Letters 97, 083107 (2010).
  12. Markel, V. and Schotland, J. On the Sign of Refraction in Anisotropic Non-Magnetic Media. J. Opt. 2010, 12, 10.
  13. McConnell, M. D., M. J. Kraeutler, S. Yang, and R. J. Composto. Patchy Multi-region Janus Particles with Tunable Optical Properties. Nano Lett., 2010, 10 (2), 603–609.
  14. Nikiforov, M. P., S. Gam, S. Jesse, R. J. Composto, and S. V. Kalinin, Morphology Mapping of Phase-Separated Polymer Films Using Nanothermal Analysis, Macromolecules 43, 6724-6730 (2010). 
  15. Paolo F., L. Kricka, Nanotechnology: Improving Clinical Testing? Clinical Chemistry 56, 1384-1389 (2010).
  16. Park, J. H., Sun, Y. E.Goldman, R. J.Composto, Tunable Nanoscale Channels in Diblock Copolymer Films for Biomolecule Organization. Langmuir 26, 10961-10967 (2010)
  17. Park, J-N, Y. Sun, Y. E. Goldman, R. J. Composto, Self Assembled Charged Hydrogels Control the Alignment of Filamentous Actin, Soft Matter 6, 915-921 (2010).
  18. Park, S. –J., S. –G. Kang, M. Fryd; J. G. Saven, S. – J. Park,  Highly Tunable Photoluminescent Properties of Amphiphilic Conjugated Block-Copolymers, J. Am. Chem. Soc., 132, 9931–9933 (2010).
  19. Raj, R., and P. K. Purohit, Moving Interfaces in Rod-Like Macromolecules, Europhys. Lett.  91, 28003 (2010).
  20. Rosario-Canales, M., P. Deria, P. Gopu, M. Therien, and J. Santiago-Avilés. Electrochemical Capacitance of Composite Electronic Materials Based on Poly(3,4-propylenedioxythiophene) and Highly-Charged Poly(aryleneethynylene)-Wrapped Carbon Nanotubes. (Manuscript in Preparation).
  21. Schotland, J. Quantum Imaging and Inverse Scattering. Opt. Lett. 35, 3309-3311 (2010)
  22. Swaminathan, T. N., T. Gao, and H.H. Hu. Deformation of a Long Elastic Particle Undergoing Electrophoresis. Journal of Colloid and Interface Science., 2010, 10, 1016
  23. Xing, Y., T.-H. Park, R. Venkatramani, S. Keinan, D. N. Beratan, M. J. Therien, and E. Borguet. Optimizing Single Molecule Conductivity of Conjugated Organic Oligomers with Conjugated Carbodithioate Linkers. J. Am. Chem. Soc. 132, 7946–7956 (2010)
  24. Zhao, H., and H. H. Bau. The Polarization of Nanorods Submerged in an Electrolyte Solution and Subjected to an AC Electric Field. Langmuir, 26, 5412–5420 (2010).
  1. Arsenault, M., Y. Sun, H. H. Bau, and Y. Goldman, Using Electrical and Optical Tweezers to Facilitate Studies of Molecular Motors, Physical Chemistry Chemical Physics, 2009, 11, 4834-4839.
  2. Brown, A.E.X., A. Hategan, D. Safer, Y. Goldman, and D. E. Discher. Cross-correlated TIRF/AFM Reveals Asymmetric Distributions of Force Generating Heads along Self-assembled, 'Synthetic' Myosin Filaments. Biophysical Journal, 2009, 96(5):1952–1960.
  3. Brown, A.E.X., R. Litvinov, D.E. Discher, P. Purohit, and J. Weisel. Multiscale Mechanics of Fibrin Polymer: Gel Stretching with Protein Unfolding and Loss of Water. Science 2009, 325: 741-744.
  4. Dan, Y., Y. Lu, N. J. Kybert, Z. Luo, and A. T. Charlie Johnson. Intrinsic Response of Graphene Vapor Sensors. Nano Letters, 2009, 9 (4), pp 1472–1475.
  5. Dixit, R., B. Barnett, J. E. Lazarus, M. Tokito, Y. E. Goldman, and E. L. F. Holzbaur, Microtubule Plus-End Tracking by CLIP-170 Requires EB1. Proc. Nat. Acad. Sci., 2009, 106: 492-492.
  6. Duncan, T. V., M. A. Mendez-Polanco, Y. Kim, S. –J. Park. Photoenhancement of Quantum Dots Assisted by Small Reducing Agents. J. Phys. Chem. C. 2009, 113, 7561.
  7. Gao, T. and H. H. Hu. Deformation of elastic particles in viscous shear flow. J. Computational Physics 2009, 228, 2132-2151.
  8. Gao, T., T.N. Swaminathan and H.H. Hu. Electrophoresis of deformable elastic particles. 62nd Annual Meeting of the Division of Fluid Dynamics, American Physical Society, Minneapolis, MN. November 22-24, 2009.
  9. Govydanov, A., G. Panasyuk, and J. Schotland. Phaseless Three-Dimensional Optical Nano-Imaging. Phys. Rev. Lett. 2009, 103, 213901.
  10. Han, L., B.H. Lui, S. Blumberg, J.F. Beausang, P.C. Nelson, and R. Phillips. Calibration of Tethered Particle Motion Experiments, in Mathematics of DNA Structure, Function and Interactions. eds. C. J. Benham, S. Harvey, W. K. Olson, D. L. Sumners, and D. Swigon. Springer, 2009.
  11. Han, L., H. G. Garcia, S. Blumberg, K. B. Towles, J. F. Beausang, P. C. Nelson, and R. Phillips. Concentration and Length Dependence of DNA Looping in Transcriptional Regulation. : PLoS ONE 2009, 4(5): e5621.
  12. Kang, Y. K., O.-L. Lee, P. Deria, S. H. Kim, T.-H. Park, D. A. Bonnell, J. G. Saven, and M. J. Therien. Helical Wrapping of Single-Walled Carbon Nanotubes by Water Soluble Poly(p-phenyleneethynylene). Nano Lett. 2009, 9 (4), 1414–1418.
  13. Luo, Z., Y. Lu, L.A. Somers, and A. T. Charlie Johnson. Preparation of Macroscopic Graphene Oxide Membranes. Journal of the American Chemical Society, 2009, 131:898 – 899.
  14. Nikiforov, M., S. Schneider, T.-H. Park, P. Milde, U. Zerweck, C. Loppacher, L. Eng, M. J. Therien, N. Engheta, and D. Bonnell. Probing Polarization and Dielectric Function of Molecules with High Order Harmonics in s-NSOM. J. Appl. Phys. 2009, 106, 114307.
  15. Panasyuk, G., J. Schotland, and V. Markel. Short-Distance Expansion for the Electromagnetic Green’s Tensor. J. Phys. A. 2009, 42, 275203.
  16. Park, Jung Hyun, Yujie Sun, Yale E. Goldman, and Russell J. Composto. Amphiphilic Block Copolymer Films: Phase Transition, Stabilization, and Nanoscale Templates. Macromolecules, 2009, 42 (4):1017–1023.
  17. Rosario-Canales, M., P. Deria, P. Gopu, M. Therien, and J. Santiago-Avilés. Composite Electronic Materials for Supercapacitor Applications, ECS Trans. 2009, 23, 3-10.
  18. Su, Tianxiang, and Prashant K. Purohit. Mechanics of Forced Unfolding of Proteins. Acta Biomaterialia, 2009,5(6), 1855-1863.
    Sun, J., J. Schotland, R. Hillenbrand, and S. Carney. Nanoscale Optical Tomography Using Volume Scanning Near-Field Microscopy. App. Phys. Lett. 2009, 95, 121108
  19. Swaminathan, T. N., and H.H. Hu. Effect of Induced Charge Double Layer on Dielectrophoretic Motion of Particles, submitted to Mechanics Research Communications, 2009, 36 (1): 46-54
  20. Therien, M. J. How to Improve Your Image. Nature (London). 2009, 458, 716-717.
    Towles, K. B., J. F. Beausang, H. G. Garcia, R. Phillips, and P. C. Nelson. First-principles Calculation of DNA Looping in Tethered Particle Experiments. Physical Biology, 2009, 6:025001.
  21. Tronin, A., V. Krishnan, J. Strzalka, I. Kuzmenko, T. Gog, C. Fry, M. J. Therien, and J. K. Blasie. Portable UV-VIS Spectrometer for Measuring Absorbance and Dichroism of Langmuir Monolayers.  Rev. Sci. Instru., 2009, 80: 033102.
  22. Zhao H., and H. H. Bau. The Polarization of a Nano Particle Surrounded by a Thick Electric Double Layer. Journal of Colloid & Interface Science. 2009, 333: 663-671.
  23. Zhao, H., and H. H. Bau. The Polarization of a Nano Particle Surrounded by a Thick Electric Double Layer. (YJCIS14682) accepted for publication in the Journal of Colloid & Interface Science, 2009, 333 (2): 663-671.
  1. Bonnell, D. A., and Garra, J., Scanning probe microscopy of oxide surfaces: atomic structure and properties, Reports on Progress in Physics 71 (2008) 044501.
  2. Chung, H.S., Jung, Y., Lee, S.-H, Zimmerman, T.J, Kim, J.W., Lee, S. H., Kim, C., Oh, K.H., and Agarwal, R., A Generic approach for catalyst-supported vertically-aligned nanowire growth, Nano Lett.  2008; 8(5); 1328-1334; DOI: 10.1021/nl0734037
  3. Dixit, R., Ross, J.L., Goldman, Y.E. and Holzbaur, E.L.F. Differential Regulation of Dynein and Kinesin Motor Proteins by Tau In Press Science 2008.
  4. Duncan T. V., Ghoroghchian P. P., Rubstov I. V., Hammer D. A., and Therien M. J., Ultrafast Excited State Dynamics of Nanoscale Near Infrared Emissive Polymersomes, J. Am. Chem. Soc.  Submitted.
  5. Duncan, T. V.; Sanchez-Gaytan, B. L.; Park, S. -J. Bifunctional Nanostructures Composed of Fluorescent Core and Metal Shell Subdomains with Controllable Geometry Submitted to J. Phys. Chem. C.
  6. Jung, Y.; Lee, S.-H.; Jennings, A. T.; Agarwal, R., Core−Shell Heterostructured Phase Change Nanowire Multistate Memory, Nano Lett. 2008; 8(7); 2056-2062.
  7. Kang Y. K., Deria P., and Therien M.J. Synthesis of Water-Soluble Poly-(p-phenyleneethynylene) in Neat Water Under Aerobic Conditions via Suzuki-Miyaura Polycondensatin using a Diborylethyne Synthon, , Org. Lett. 2008, 10(7), 1341-1344.
  8. Lehmann, A., Lanci, C.J., Petty II, T.J., Kang, S. G., and Saven, J.G.,Computational Protein Design.  To appear in Protein Folding and Misfolding (ed. V. Munoz; Royal Society of Chemistry), 2008. (book chapter)
  9. Li D., Bonnell D. A. Controlled Patterning of Ferroelectric Domains: Fundamental Concepts and Applications, Annual Reviews of Materials Research 2008 Vol. 38: 351-368. D. R. Clarke in press
  10. Mark, S.S., Stolper, S.I., Baratti, C., Park, J.Y., Taku, M.A., Santiago-Avilés, J.J., and Kricka, L.J., Bioconjugation of Alkaline Phosphatase to Mechanically Processed, Aqueous Suspendible Electrospun Polymer Nanofibers for Use in Chemiluminescent Detection Assays, Biochemical Journal, In Press
  11. McAllister K. A., Zou H., Cochran F. V., G. Bender M., Senes A., H. C. Fry, Nanda V., Keenan P. A., Lear J. D., Therien M. J., Blasie J. K., and DeGrado W. F. Using α-Helical Coiled-Coils to Design Nanostructured Porphyrin Arrays, , J. Am. Chem. Soc.  Accepted.
  12. Mukundakrishnan, K., Hu, H.H. and Ayyaswamy, P.S., The dynamics of two identical spherical particles in a confined rotating flow: part I - pedaling motion, J. Fluid Mech 599, 169-204 (2008).
  13. Nikiforov M., Zerwek U., Milde P., Loppacher C., Park T.-H., H. Uyeda T., Therien M. J., Eng L., and Bonnell D.,The Effect of Molecular Orientation on the Potential of Porphyrin–Metal Contacts, Nano Lett. 2008, 8, 110-113.
  14. Panasyuk G. Y., Schotland, J. C., and Markel V. A.,  Classical Theory of Optical Nonlinearity in Conducting Nanoparticles, Phys. Rev. Lett. 100, 047402 (2008)
  15. Perrin, A. and Hu, H.H., An explicit Lax-Wendroff scheme for particulate flows with Stokes flow boundary conditions, under review Journal of Computational Physics.
  16. Querner, C., Fischbein, M.D. and Drndic, M., Modular and versatile assembly of nanoparticles, Submitted, 2008.
  17. Querner, C., Fischbein, M.D., Heiney, P. and Drndic, M., Milimeter-scale assembly of CdSe nanorods into smectic superstructures by solvent drying kinetics, Advanced Materials 20, in press, 2008.
  18. Ross, J.L., Shuman, H., Holzbaur, E.L.F., Goldman, Y.E., Kinesin and Dynein-Dynactin at Intersecting Microtubules: Motor Density Affects Dynein Function, Biophys. J. 2008 94: 3115-3125
  19. Saven, J.G., Computational aspects of protein design.  Chapter to appear in Computational Structural Biology (eds. Manuel C. Peitsch and Torsten Schwede), 2008. (book chapter)
  20. Swaminathan, T.N. and Hu, H.H., Effect of induced charge double layer on dielectrophoretic motion of particles, submitted to Mechanics Research Communications.
  21. Tronin, A., Kuzmenko, I., Strzalka, J., Krishnan, V. and Blasie, J.K.  Portable UV-VIS Spectrometer for Measuring Absorbance and Dichroism of Langmuir Monolayers.  Submitted to Langmuir.
  22. Uttayarat P., Chen M., Li M., Allen F., Composto R. J., and Lelkies P. I . Microtopography and Flow Modulate the Direction of Endothelial Cell Migration Am. J. Physiol Heart Circ. Physiol 294:H1027-H1035, 2008.
  23. Wang, Y., Ramos, I., and Santiago-Aviles, J.J., Electrical characterization of single electrospun porous tin oxide nanofiber, IEEE Transactions in Nanotechnology, In press.
  24. Zhao, H., and Bau, H. H., The Effect of Double Layer Polarization on the Forces that Act on a Nanosize, Cylindrical Particle in an AC Electric Field, Langmuir 23(12), 6050-6059, 2008.
  25. Zou H., Therien M. J. and Blasie J. K., Structure and Dynamics of an Extended Conjugated NLO Chromophore within an Amphiphilic 4-Helix Bundle Peptide by Molecular Dynamics Simulation, , J. Phys. Chem. B. 112, 1350-1357, 2008.
  1. Arsenault, M., Zhao, H., H., Peruhoit, P., Goldman, Y., and Bau, H. H., 2007, Confinement and Manipulation of Actin Filaments by Electric Fields, Biophysical Journal 93, L42-L44
  2. Beausang, J.F, Sun, Y., Quinlan, M.E., Forkey, N.F. and Goldman, Y.E., Orientation and Rotational motions of Single Molecules by Polarized Total Internal Reflection Fluorescence Microscopy. Cold Spring Harbor Laboratory Manuals 2007.
  3. Beausang, J.F. and Nelson, P.C. Diffusive hidden Markov model characterization of DNA looping dynamics in tethered particle experiments. Physical Biol., 4: 205-219 (2007).
  4. Beausang, J.F.; Zurla, C.; Finzi, L.; Sullivan, L., Finzi, L., and Nelson, P.C. Elementary simulation of tethered Brownian motion. American J. Phys., 75: 520-523 (2007).
  5. Beausang, J.F.; Zurla, C.; Manzo, C; , Dunlap, D., Finzi, L., and Nelson, P. C. DNA looping kinetics analyzed using diffusive hidden Markov model. Biophys. J., 92: L64-L66 (2007).
  6. Bender G. M., Lehmann A., Zou H., Cheng H., Fry H. C., Engel D., Therien M. J., Blasie J. K., Roder H., Saven J. G., and DeGrado W. F. De Novo Design of a Single Chain Diphenylporphyrin Metalloprotein,  J. Am. Chem. Soc. 2007, 129, 10732-10740.
  7. Brown AEX, Rustem I, Litvinov I, Discher DE, Weisel JW: Forced unfolding of coiled-coils in fibrinogen by single-molecule AFM. Biophysical Journal Biophysical Letters 92:L39-41, 2007.
  8. Chung H-J, Ohno K, Fukuda T, Composto RJ: Internal phase separation destabilizes multicomponent polymer films.  Macromolecules  40:384-388, 2007.
  9. Davis B., Swan A.. Goldberg B., Schotland, J. C. and Carney P. S., Spectral Self-Interference Microscopy for Nanoscale Axial Imaging, J. Opt. Soc. Am. A 24, 3587 (2007)
  10. Desai, R.A., Yang, M.T., Sniadecki, N.J., Legant, W.R., Chen, C.S. (2007) Microfabricated Post-Array-Detectors (mPADs): an approach to isolate mechanical force. JoVE (Journal of Visualized Experiments) 7.
  11. Deshmukh R. D. and Composto R. J. Direct Observation of Nanoparticle Embedding into the Surface of a Polymer Melt Langmuir, 23, 13169-13173, 2007.
  12. Deshmukh R. D., Liu Y. and Composto R. J. Two-Dimensional Confinement of Nanorods in Block Copolymer Domains Nano Letters, 7, 3662-3668, 2007.
  13. Deshmukh RD, Composto RJ: Surface segregation and formation of silver nanoparticles created in-situ in poly(methyl methacrylate) films.  Chemistry of Materials  19:745-754, 2007.
  14. Emanuel, M., Mohrbach, H., Sayar, M., Schiessel, H., and Kulic, I.M. Buckling of stiff polymers: Influence of thermal fluctuations. Phys. Rev. E 76: 061907-(1-15) (2007).
  15. Fischbein, M. D. and Drndic, M., Sub-10 nm device fabrication in a transmission electron microscope, Nano Letters, 7, 1329-1337, 2007.
  16. Geng Y, Dalhaimer P, Cai S, Tsai R, Tewari M, Minko T, Discher DE: Shape effects of filaments versus spherical particles in flow and drug delivery.  Nature Nanotechnology  2:249-55, 2007.
  17. Johnson C.P., Tang H-Y., Carag C., Speicher D.W., and Discher D.E..  Forced unfolding of proteins within cells. Science 317: 663-666 (2007). 
  18. Johnston, D. E.; Strachan, D. R.; Johnson, A. T., Parallel fabrication process for nanogap electrodes. Nano Letters 2007, 7, 2774-2776.
  19. Jung, Y., Ko, D.-K., and Agarwal, R., Synthesis and Structural Characterization of Branched Nanowire Heterostructures, Nano Letters. 2007, 7, 264 -268.
  20. Kang, S.-G., and Saven, J.G., Computational protein design: structure, function and combinatorial diversity.  Current Opinion in Chemical Biology, 2007.  11: 329-334.
  21. Kulic, I.M. and Nelson, P.C.. Hitchhiking Through the Cytoplasm. Europhys. Lett. 81:18001-(1-6) (2007).
  22. Kulic, I.M., Mohrbach, H., Thaokar, R. and Schiessel, H., Equation of state of looped DNA. Phys. Rev. E 75: 011913-(1-23) (2007).
  23. Liu H, Qian S, Bau HH: The effect of translocating cylindrical particles on the ionic current through a nano-pore.  Biophysical Journal  92:1164-1177, 2007.
  24. Mohrbach. H. and Kulic, I.M. Motor driven microtubule shape fluctuations: Force from within the lattice. Phys. Rev. Lett. 99: 218102-(1-4) (2007).
  25. Nelson, P.C. Colloidal particle motion as a diagnostic of DNA conformational transitions. Curr. Op. Colloid Interf. Sci. 12: 307-313 (2007).
  26. Nikiforov M., Bonnell D. A. Scanning Probe Microscopy in Materials Science  Science of Microscopy  ed P. Hawkes, J. Spence  Springer (2007)
  27. Nikiforov MP, Bonnell DA, Dutton PL, Assembly and Optoelectrical Properties of Amphiphilic Peptides With Chain of Cofactors For Electron Transfer Between Interfaces. et al.  Biophysical Journal  Suppl. S (2007) 503A
  28. Park T. H. and Therien M. J. Carbodithioate-Terminated Oligo(Phenyleneethynylene)s: Synthesis and Surface Functionalization of Gold Nanoparticles, , Org. Lett. 2007, 9, 2779-2782.
  29. Rankin C., Chou C., Conklin D., Bonnell D. Polarization and Local Reactivity on Organic Ferroelectric Surfaces: Ferroelectric Nanolithography using Poly (vinylidene fluoride) ACS Nano 1 (2007) 234-238.
  30. Seol, Y.; Li, J.Y.; Nelson, P.C.; et al. Elasticity of short DNA molecules: Theory and experiment for contour lengths of 0.6-7 micrometer. Biophys. J., 93: 4360-4373 (2007).
  31. Sinha S, Rossi M, Mattia D, Gogotsi Y, Bau HH: Induction and measurement of minute flow rates through nanopipes.  Physics of Fluids  19:013603, 2007.
  32. Sniadecki N.J., Anguelouch A, Yang M.T., Lamb C.M., Liu Z., Kirschner S.B., Liu Y, Reich D.H., Chen C.S. (2007) Magnetic microposts as an approach to apply forces to living cells./ Proc Nat Acad Sci /. 104: 14553-14558.
  33. Sniadecki, N.J., Chen, C.S. (2007) Microfabricated Silicone Elastomeric Post Arrays for Measuring Traction Forces of Adherent Cells. In /Methods in Cell Biology - Cell Mechanics, Volume 83. /(ed. Y-L. Wang and D.E. Discher), Elsevier: New York. 13:313-328.
  34. Strachan D. R., Johnston D. E., Guiton B. S., Datta S. S., Davies P. K., Bonnell D. A., and Johnson A. T. Real-Time TEM Imaging of the Formation of Crystalline Nano-scale Gaps, Phys. Rev. Lett. (2007)
  35. Sun J., Carney P. S. and Schotland, J. C.,  Strong Tip Effects in Near-Field Scanning Optical Tomography, J. App. Phys. 102, 103103 (2007)
  36. Sun Y, Schroeder HW 3rd, Beausang JF, Homma K, Ikebe M, and Goldman Y.E. Myosin VI Walks "Wiggly" on Actin with Large and Variable Tilting. Mol Cell. 28:954-964. 2007.
  37. Wang, Y, Qin, H, Kudaravalli, RD, Kirillov, SV, Dempsey, GT, Pan, D, Cooperman, BS, and Goldman, Y.E., Single-Molecule Structural Dynamics of EF-G-Ribosome Interaction during Translocation. Biochem. 46:10767-10775. 2007.
  38. Wang, Y., and Santiago-Aviles, J.J., Piezo-response imaging of spontaneous polarization domains in zirconate titanate microfibers and numerical analysis of the electric field distribution, Applied Physics Letters, 91,1 (2007).
  39. Wang, Y., Ramos, I., and Santiago-Avilés, J.J., Detection of Moisture and Methanol Gas Using a Single Electrospun Tin Oxide Nanofiber, IEEE Sensors Journal, 7(9), 1347-1348 (2007)
  40. Wang, Y., Ramos, I., and Santiago-Aviles, J.J., Optical bandgap and photoconductance of electrospun tin oxide nanofibers, Journal of Applied Physics, 102,1 (2007).
  41. Wang, Y., Ramos, I., and Santiago-Aviles, J.J., Synthesis of ultra-fine porous tin oxide fibers and its process characterization, Nanotechnology 18, 295601 (2007).
  42. Yang, M.T., Sniadecki, N.J., Chen, C.S. (2007) Geometric considerations of micro- to nanoscale elastomeric post arrays to studfy cellular traction forces, Advanced Materials 19: 3119–3123.
  43. Zhang, Y.B., Kanungo, M., Ho, A.J., Freimuth, P., van der Lelie, D., Chen, M., Khamis, S., Datta, S., Johnson, A.T., Misewich, J.A. and Wong, S.S., Functionalized carbon nanotubes for detecting viral proteins, Nano Lett., 7 (10), 3086 -3091, 2007.
  44. Zhao, H., and Bau, H. H., Microfluidic chaotic stirrer utilizing induced-charge electroosmosis, Phys. Rev. E  75, 066217 (1-8), 2007 (selected for the July 9, 2007 issue of Virtual Journal of Nanoscale Science & Technology). 
  45. Zhao, H., and Bau, H. H., On the Effect of Induced Electro-Osmosis on a Cylindrical Particle Next to a Surface, Langmuir 23(7), 4053-4063, 2007.
  1. An X, Guo X, Zhang X, Baines AJ, Debnath G, Salamao M, Mayo D, Bhasin N, Johnson C, Discher DE, Gratzer WB, Mohandas N: Conformational stabilities of the structural repeats of erythroid spectrin and their functional implications.  Journal of Biological Chemistry 281:10527-32, 2006.
  2. Beausang JF, Schroeder HW, Gilmour JA, Goldman YE: Twirling of actin by myosins ii and v.  Biophys J  90:587a, 2006.
  3. Cao L, Garipcan B, Atchison JS, Ni C, Nabet B, Spanier JE: Instability and transport of metal catalyst in the growth of tapered silicon nanowires. Nano Lett. 6:1852-1857, 2006.
  4. Cao L, Nabet B, Spanier JE: Enhanced raman scattering from individual semiconductor nanocones and nanowires.  Phys. Rev. Lett.  96:157402, 2006.
  5. Discher D.E., Johnson C., Bhasin N..  Covalent chemistry on distended proteins. Commentary in PNAS (Proceedings of the National Academy of Science – USA)  103: 7533-7534 (2006).
  6. Engler A., Sen S., Sweeney H.L., and Discher D.E..  Matrix elasticity directs stem cell lineage specification. Cell 126: 677-689 (2006). 
  7. Fischbein, M.D. and Drndic, M., Nanogaps by direct lithography for high-resolution imaging and electronic characterization of nanostructures, Applied Physics Letters, 88 (6), 063116, 2006.
  8. Hu Z, Fischbein M, Querner C, Drndic M: Electric-field-driven accumulation and alignment of CdSe and CdTe nanorods in nanoscale devices.  Nano Letters 6:2585-2591, 2006.
  9. Li J, Nelson PC, Betterton MD: Entropic elasticity of DNA with a permanent kink.  Macromolecules  39:8816-8821, 2006.
  10. Miksa D, Irish ER, Chen D, Composto RJ, Eckmann DM: Dextran functionalized surfaces via reductive amination: morphology, wetting and adhesion.  Biomacromolecules  7:557-64, 2006.
  11. Nelson PC, Zurla C, Brogioli D, Beausang JF, Finzi L, Dunlap D: Tethered particle motion as a diagnostic of DNA tether length.  Journal of Physical Chemistry B 110:17260-17267, 2006.
  12. Nikiforov M, Liu H, Craighead H, Bonnell D: Polarization controlled transport in PANI-BaTiO3 nanofibers.  Nano Letters 6, 2006.
  13. Panasyuk G, Markel V, Carney S, Schotland J: Nonlinear inverse scattering and three dimensional near-field optical imaging.  App. Phys. Lett.  89:221116, 2006.
  14. Riegelman M, Liu H, Bau HH: Controlled nano-assembly and construction of nanofluidic devices.  J. Fluid Engineering 128: 6-13, 2006.
  15. Spanier JE, Kolpak A, Urban JJ, Yun WS, Ouyang L, Grinberg I, Rappe AM, Park H: Ferroelectric phase transition in individual single-crystalline BaTiO3 nanowires.  Nano Lett ASAP, 2006.
  16. Strachan D, Smith D, Fishbein M, Johnson D, Guiton B, Drndic M, Bonnell D, Johnson AT: Clean electromigrated nanogaps imaged by tem.  Nano Letters  6:441-444, 2006.
  17. Sun J, Carney S, Schotland J: Near-field scanning optical tomography: a nondestructive method for three-dimensional nanoscale imaging. IEEE J. Selected Topics in Quantum Electronics  12:1072, 2006.
  18. Sun Y, Schroeder HW, Beausang JF, Homma K, Ikebe M, Goldman YE: Single molecule fluorescence polarization of calmodulin in myosin vi.  Biophys J  90:431a, 2006.
  19. Wiggins PA, Heijden T van der, Moreno-Herrero F, Spakowitz A, Phillips R, Widom J, Dekker C, Nelson PC: High flexibility of DNA on short length scales probed by atomic force microscopy. Nature Nanotechnology 1:137-141, 2006.
  20. Wiggins PA, Nelson PC: Generalized theory of semiflexible polymers.  Phys. Rev. E 73:031906-1-13, 2006.
  21. Xu C, Fryd M, Wayland BB, Winey KI, Composto RJ: pH-Responsive nanostructures assembled from amphiphilic block copolymers.  Macromolecules  39:6063-6070, 2006.
  22. Xu C, Fu X, Fryd M, Xu S, Wayland BB, Winey KI, Composto RJ: Reversible stimuli-responsive nanostructures assembled from amphiphilic block copolymers.  Nano Letters  6: 282-87, 2006.
  23. Xu T, Strzalka J, Tronin A, Wu SP, Miloradovic I, Kuzmenko I, Gog T, Therien MJ, Blasie JK: Structural Studies of Amphiphilic 4-helix bundle peptides incorporating designed extended chromophores for nonlinear optical biomolecular materials.  Nano Letters  6:2395-2405, 2006.
  24. Xu T, Wu SP, Miloradovic I, Therien MJ, Blasie JK: Incorporation of designed extended chromophores into amphiphilic 4-helix bundle peptides for nonlinear optical biomolecular materials.  Nano Letters  6:2387-2394, 2006.
  25. Yu Wang, Santiago-Aviles JJ: Large negative magnetoresistance and strong localization in highly disordered electrospun pregraphitic carbon nanofiber.  Applied Physics Letters  89:123119, 2006.
  1. Cao L, Laim L, Ni C, Nabet B, Spanier JE: Diamond-hexagonal semiconductor nanocones with controllable apex angle.  J Amer Chem Soc. 127:13782, 2005.
  2. Cochran FV, Wu SP, Wang W, Nanda V, Saven JG, Therien MJ, DeGrado WF: Computational de novo design and characterization of a four-helix bundle protein that selectively binds a nonbiological cofactor. J Amer Chem Soc 127:1346 –1347, 2005.
  3. Edwards B, Engheta N, Evoy S: Theory of simultaneous control of orientation and translational motion of nanorods using positive dielectrophoretic forces. Journal of Applied Physics, 98:124314, 2005.
  4. Fischbein M, Drndiç M: CdSe nanocrystal quantum-dot memory. Applied Physics Letters, 86: 193106, 2005.
  5. Fischbein, M.D. and Drndic, M., CdSe Nanocrystal Quantum Dot Memory, Applied Physics Letters 86 (19), p. 193106-1 to 193106-3, 2005.
  6. Goldstein RE, Nelson PC, Powers TR: Teaching biological physics. Phys Today 58:3 46, 2005.
  7. Hu Z, Fischbein MD, Drndiç M: Local charge transport in two-dimensional PbSe nanocrystal arrays studied by electrostatic force microscopy.  Nano Letters 5: 1463, 2005.
  8. Lee MH, Brass DA, Morris RM, Composto RJ, Ducheyne P: The effect of non-specific interactions on cellular adhesion using model surfaces. Biomaterials 26:1721-1730, 2005.
  9. Strachan DR, Smith DE, Johnston DE, Park T-H, Therien MJ, Bonnell DA, Johnson AT: Controlled fabrication of nanogaps in ambient environment for molecular electronics. Appl Phys Lett 86:043109, 2005.
  10. Wiggins PA, Phillips RP, Nelson PC: Exact theory of kinkable elastic polymers. Phys Rev E71 art:021909, 2005.
  11. Ye S, Discher BM, Strzalka J, Xu T, Wu SP, Noy D, Kuzmenko I, Gog T, Therien MJ, Dutton PL, Blasie JK: Amphiphilic 4-helix bundle peptides designed for light-induced electron transfer across a soft interface.  Nano Lett  5:1658-67, 2005.
  1. Angiolillo PJ, Uyeda HT, Duncan TV, Therien MJ: Impact of electronic asymmetry on photoexcited triplet-state spin distributions in conjugated porphyrin oligomers probed via EPR spectroscopy. J Phys Chem B 108:11893-11903, 2004.
  2. Bhasin N, Carl P, Harper S, Feng G, Lu H, Speicher DW, Discher DE: Chemistry on a single protein, VCAM-1, during forced unfolding. J Biol Chem 279:45865-45874, 2004.
  3. Duncan TV, Rubtsov IV, Uyeda HT, Therien MJ: Highly conjugated (polypyridyl)metal-(porphinato)zinc(II) compounds: long-lived, high oscillator strength, excited-state absorbers having exceptional spectral coverage of the near-infrared. J Am Chem Soc 126:9474-9475, 2004.
  4. Farah MJ, Illes J, Cook-Deegan R, Gardner H, Kandel E, King P, Parens P, Sahakian B, technologies and their ethical implications. Hastings Center Report 34:35-45, 2004.
  5. Farah MJ, Wolpe PR: Monitoring and manipulating brain function: new neuroscience technologies and their ethical implications. Hastings Center Report 34:35-45, 2004.
  6. Liu H, Bau HH, Hu H: Electrophoresis of concentrically and eccentrically positioned cylindrical particles in a long tube. Langmuir 20:2628-2639, 2004.
  7. Liu H, Bau HH, Hu H: On the translation of a cylinder in a long tube. Physics of Fluids 16:998-1007, 2004.
  8. Liu H, Bau HH: The dielectrophoresis of cylindrical and spherical particles submerged in shells and in semi-infinite media. Physics of Fluids 16:1217-1228, 2004.
  9. Qian S, Bau HH: Analysis of lateral flow bio-detectors: competitive format. Anal Biochem 326: 211–224, 2004.
  10. Riegelman M, Liu H, Bau HH: Controlled nano-assembly and construction of nanofluidic devices. Trans ASME, J Fluid Eng, 2004.
  11. Rubtsov IV, Russo R, Albers T, Deria P, Luzzi DE, Therien MJ: Visible and near-infra red excited-state dynamics of single-walled carbon nanotubes. Appl Phys A 79:1747-1751, 2004.
  12. Slovic A, Kono H, Lear J, Saven JG, DeGrado WF: Computational design and characterization of water-soluble analogues of the potassium channel KcsA. Proc Nat Acad Sci 101:1828-1833, 2004.
  13. Takagi Y, Shuman H, Goldman YE: Coupling between phosphate release and force generation in muscle actomyosin. Philos Trans R Soc Lond B Biol Sci 29:359(1452):1913-20, 2004.
  14. Wolpe PR: Neurocognitive enhancement: what can we do and what should we do? Nature Reviews Neuroscience 5:421-425, 2004.
  15. Wolpe PR: Neurotechnology and brain-computer interfaces: ethical and social implications. Emerging Technologies and Ethical Issues in Engineering, National Academy of Engineering. Washington, D.C. The National Academies Press, 2004.


NBIC-Related Publications

  1. Chung, HJ; Kim J, Ohno, K; Composto, RJ, "Controlling the Location of Nanoparticles in Polymer Blends by Tuning the Length and End Group of Polymer Brushes", ACS Macro Letters, vol. 1, (2012), p. 252., " "
  2. Hore, MJA; Frischknecht, AL; Composto, RJ, "Nanorod Assemblies in Polymer Films and Their Dispersion-Dependent Optical Properties", ACS Macro Letters, vol. 1, (2012), p. 115.
  3. Jiang, GQ; Hore, MJA; Gam, S; Composto, RJ, "Gold Nanorods Dispersed in Homopolymer Films: Optical Properties Controlled by Self-Assembly and Percolation of Nanorods", ACS Nano, vol. 6, (2012), p. 1578., "10.1021/nn204544 "
  4. Perez-Aguilar, JM; Saven, JG, "Computational Design of Membrane Proteins", Structure, vol. 20, (2012), p. 5., "10.1016/j.str.2011.12.00 "
  5. Xu, LB; Karunakaran, RG; Guo, J; Yang, S, "Transparent, Superhydrophobic Surfaces from One-Step Spin Coating of Hydrophobic Nanoparticles", ACS Applied Materials & Interfaces, vol. 4, (2012), p. 1118., "10.1021/am201750 "
  1. Adiga, SP; Adiga, VP; Carpick, RW; Brenner, DW, "Vibrational Properties and Specific Heat of Ultrananocrystalline Diamond: Molecular Dynamics Simulations", Journal Of Physical Chemistry C, vol. 115, (2011), p. 21691., "10.1021/jp207424 "
  2. Bharill, S; Chen, CL; Stevens, B; Kaur, J; Smilansky, Z; Mandecki, W; Gryczynski, I; Gryczynski, Z; Cooperman, BS; Goldman, YE, "Enhancement of Single-Molecule Fluorescence Signals by Colloidal Silver Nanoparticles in Studies of Protein Translation", ACS Nano, vol. 5, (2011), p. 399., "10.1021/nn101839 "
  3. Chi, SH; Rosenberg, A; Nayak, A; Duncan, TV; Therien, MJ; Butler, JJ; Montgomery, SR; Beadie, G; Pong, RGS; Shirk, JS; Flom, SR, "Near IR nonlinear absorption of an organic supermolecule", Optical Materials Express, vol. 1, (2011), p. 1383., " "
  4. Dafinone, MI; Feng, G; Brugarolas, T; Tettey, KE; Lee, D, "Mechanical Reinforcement of Nanoparticle Thin Films Using Atomic Layer Deposition", ACS Nano, vol. 5, (2011), p. 5078., "10.1021/nn201167 "
  5. Gam, S; Corlu, A; Chung, HJ; Ohno, K; Hore, MJA; Composto, RJ, "A jamming morphology map of polymer blend nanocomposite films", Soft Matter, vol. 7, (2011), p. 7262., "10.1039/c1sm05619 "
  6. Grigoryan, G; Kim, YH; Acharya, R; Axelrod, K; Jain, RM; Willis, L; Drndic, M; Kikkawa, JM; DeGrado, WF, "Computational Design of Virus-Like Protein Assemblies on Carbon Nanotube Surfaces", Science, vol. 332, (2011), p. 1071., "10.1126/science.119884 "
  7. Grogan, JM; Rotkina, L; Bau, HH, "In situ liquid-cell electron microscopy of colloid aggregation and growth dynamics", Physical Review E, vol. 83, (2011), "10.1103/PhysRevE.83.06140 "
  8. Hore, M. J. A., and R. J. Composto. Nanorod Self-Assembly for Tuning Optical Absorption.  ACS Nano, 4, 6941-6949 (2011).
  9. Ishizuka, T., L. E. Sinks, K. Song, S.-T. Hung, A. Nayak, K. Clays, and M. J. Therien, The Roles of Molecular Structure and Effective Optical Symmetry in Evolving Dipolar Chromophoric Building Blocks to Potent Octopolar NLO Chromophores, J. Am. Chem. Soc. 133, 2884–2896 (2011).
  10. Karunakaran, RG; Lu, CH; Zhang, ZH; Yang, S, "Highly Transparent Superhydrophobic Surfaces from the Coassembly of Nanoparticles (<= 100 nm)", Langmuir, vol. 27, (2011), p. 4594., "10.1021/la104067 "
  11. Kathan-Galipeau, K., P.Wu, Y. Li, L.-Q. Chen, A. Soukiassian, X. Xi, D. G. Schlom, and D. A. Bonnell, Quantification of Internal Electric Fields and Local Polarization in Ferroelectric Superlattices, ACS Nano 5 640-646 (2011).
  12. Konicek, AR; Jaye, C; Hamilton, MA; Sawyer, WG; Fischer, DA; Carpick, RW, "Chemical imaging of both sides of a tribological interface: application of a new x-ray absorption spectroscopy imaging method", Tribology Letters, vol. 44, (2011), p. 99., " "
  13. Lee, D., J. S. Katz, P. R. Frail, M. J. Therien, J. C. Crocker, D. A. Hammer, Effects of Membrane Rheology on Leuko-polymersome Adhesion to Inflammatory Ligands, G. P. Robbins, Soft Matter 7, 769–779 (2011).
  14. Lee, HS; Eckmann, DM; Lee, D; Hickok, NJ; Composto, RJ, "Symmetric pH-Dependent Swelling and Antibacterial Properties of Chitosan Brushes", Langmuir, vol. 27, (2011), p. 12458., "10.1021/la202616 "
  15. Lu, Y; Merchant, CA; Drndic, M; Johnson, ATC, "In Situ Electronic Characterization of Graphene Nanoconstrictions Fabricated in a Transmission Electron Microscope", NANO Letters, vol. 11, (2011), p. 5184., "10.1021/nl202375 "
  16. Luo, ZT; Kim, S; Kawamoto, N; Rappe, AM; Johnson, ATC, "Growth Mechanism of Hexagonal-Shape Graphene Flakes with Zigzag Edges", ACS Nano, vol. 5, (2011), p. 9154., "10.1021/nn203381 "
  17. Ombelli, M; Costello, L; Postle, C; Anantharaman, V; Meng, QC; Composto, RJ; Eckmann, DM, "Competitive protein adsorption on polysaccharide and hyaluronate modified surfaces", Biofouling, vol. 27, (2011), p. 505., "10.1080/08927014.2011.58571 "
  18. Prentice, JS; Homann, J; Simmons, KD; Tkacik, G; Balasubramanian, V; Nelson, PC, "Fast, Scalable, Bayesian Spike Identification for Multi-Electrode Arrays", Plos One, vol. 6, (2011), "10.1371/journal.pone.001988 "
  19. Samish, I; MacDermaid, CM; Perez-Aguilar, JM; Saven, JG, "Theoretical and Computational Protein Design", Annual Review Of Physical Chemistry, VOL 62, vol. 62, (2011), p. 129., "10.1146/annurev-physchem-032210-10350 "
  20. Saven, JG, "Computational protein design: engineering molecular diversity, nonnatural enzymes, nonbiological cofactor complexes, and membrane proteins", Current Opinion In Chemical Biology, vol. 15, (2011), p. 452., "10.1016/j.cpa.2011.03.01 "
  21. Shuvaev, VV; Ilies, MA; Simone, E; Zaitsev, S; Kim, Y; Cai, SS; Mahmud, A; Dziubla, T; Muro, S; Discher, DE; Muzykantov, VR, "Endothelial Targeting of Antibody-Decorated Polymeric Filomicelles", ACS Nano, vol. 5, (2011), p. 6991., "10.1021/nn201545 "
  22. Su T, Purohit P, "Entropically driven diffusion - Application to motion of polymers in non-uniform nanochannels", Physical Review E, vol. 83, (2011).
  23. Susumu, K; Fisher, JAN; Zheng, JR; Beratan, DN; Yodh, AG; Therien, MJ, "Two-Photon Absorption Properties of Proquinoidal D-A-D and A-D-A Quadrupolar Chromophores", Journal Of Physical Chemistry A, vol. 115, (2011), p. 5525., "10.1021/jp200073"
  24. Tsai, I.Y., N. Tomczyk, J. I. Eckmann, R. J. Composto, and D. M. Eckmann, Human Plasma Protein Adsorption onto Dextranized Surfaces: A Two-Dimensional Electrophoresis and Mass Spectrometry Study. Colloids and Surfaces B: Biointerfaces 84, 241-252 (2011).
  25. Tsai, IY; Kuo, CC; Tomczyk, N; Stachelek, SJ; Composto, RJ; Eckmann, DM, "Human macrophage adhesion on polysaccharide patterned surfaces", Soft Matter, vol. 7, (2011), p. 3599., "10.1039/c0sm01353 "
  26. Vora, PM, Gopu P, Rosario-Canales M, Perez CR, Gogotsi ,Y, Santiago-Aviles, JJ, and Kikkawa J, “Correlating Magnetotransport and Diamagnetism of sp2-Bonded Carbon Networks through the Metal-Insulator Transition", Physical Review B84, 155114 (2011).
  27. Wang, SY; Querner, C; Dadosh, T; Crouch, CH; Novikov, DS; Drndic, M, "Collective fluorescence enhancement in nanoparticle clusters", Nature Communications, vol. 2, (2011),  "10.1038/ncomms135 "
  28. Yoo, JW; Irvine, DJ; Discher, DE; Mitragotri, S, "Bio-inspired, bioengineered and biomimetic drug delivery carriers", Nature Reviews Drug Discovery, vol. 10, (2011), p. 521., "10.1038/nrd349 "
  1. Bharill, S., C. Chen, B. Stevens, J. Kaur, Z. Smilansky, W. Mandecki, I. Gryczynski, Z. Gryczynski, B. S. Cooperman, B.S. and Y. E.Goldman, Enhancement of Single-Molecule Fluorescence Signals by Colloidal Silver Nanoparticles in Studies of Protein Translation. ACS Nano 5, 399–407 (2010).
  2. Bhaskaran, H., B. Gotsmann, A. Sebastian, U. Drechsler, M. Lantz, M. Despont, P. Jaroenapibal, R.W. Carpick, Y. Chen & K. Sridharan. Ultra-low Nanoscale Wear through Atom-by-atom Attrition in Silicon-Containing Diamond-like-Carbon. Nature Nanotechnology 5 181-185 (2010).
  3. Buxboim A., K. Rajagopal, A.E.X. Brown, and D.E. Discher. How Deeply Cells Feel:  Methods for Thin Gels. J. Phys.: Condens. Matter 22 194116 (2010).
  4. Coll Ferrer, M.C., S. Yang, D. M. Eckmann., R. J. Composto, R.J. (2010).  Creating Biomimetic Polymeric Surfaces by Photochemical Attachment and Patterning of Dextran. Langmuir 26, 14126-14134 (2010).
  5. Duncan, T. V., P. R. Frail, I. M. Miloradovic, and M. J. Therien, Excitation of Highly Conjugated (Porphinato)palladium(II) and (Porphinato)platinum(II) Oligomers Produces Long-Lived, Triplet States at Unit Quantum Yield That Absorb Strongly over Broad Spectral Domains of the NIR, J. Phys. Chem. B. 114, 14696–14702 (2010).
  6. Fairfield, J. A., T. Dadosh, M. Drndic, Characterization of Memory and Measurement History in Photoconductivity of Nanocrystal Arrays, Applied Physics Letters 97, 143112, (2010).
  7. Fischbein, Michael D., Matthew Puster, and Marija Drndić. Monolayer suppression of transport imaged in arrays of annealed PbSe nanocrystals. Nano Letters 10, 2155–2161 (2010).
  8. Fry, H. C., A. Lehmann, J. G. Saven, W. F. DeGrado, and M. J. Therien. Computational Design and Elaboration of a De Novo Heterotetrameric a-Helical Protein that Selectively Binds an Emissive Abiological (Porphinato)zinc Chromophore. J. Am. Chem. Soc. 2010, 132: 3997–4005 .
  9. Fry, H. C., A. Lehmann, J. G. Saven, W. F. DeGrado, and M. J. Therien. Design and Elaboration of a Photo-Activatable De Novo Protein: A Heterotetrameric a-Helical Bundle that Selectively Binds an Abiological Porphinato(zinc) Chromophore.  Journal of the American Chemical Society. 132 3997–4005 (2010).
  10. Gonella, G., H.-L. Dai, H. C. Fry, M. J. Therien, V. Krishnan, A. Tronin, and J. K Blasie. Control of the Orientational Order and Nonlinear Optical Response of the Push-Pull Chromophore RuPZn via Specific Incorporation into Densely-Packed Monolayer Ensembles of an Amphiphilic 4-Helix Bundle Peptide: Part II - Second Harmonic Generation at High Chromophore Densities. J. Am. Chem. Soc., 2010, 132: 9693-9700.
  11. Greiner, J. R. Felts, Z. Dai, W.P. King & R.W. Carpick, Local Nanoscale Heating Modulates Single-Asperity Friction. Nano Lett. 10, 4640–4645 (2010).
  12. Hu, X., D. Xiao, S. Keinan, I. Asselberghs, M. J. Therien, K. Clays, W. Yang, and D. N. Beratan, Predicting the Frequency Dispersion of Electronic Hyperpolarizabilities based on Absorption Data and Thomas-Kuhn Sum Rules, J. Phys. Chem. C. 114, 2349–2359 (2010).
  13. Kamat, N. P., G. P. Robbins, J. Rawson, M. J. Therien, I. J. Dmochowski, and D. A. Hammer, A Generalized System for Photo-Responsive Membrane Rupture in Polymersomes, Adv. Funct. Mater. 20, 2588–2596 (2010).
  14. Korendovych, I. V., A. Senes, Y. H. Kim, A. V. Astashkin, J. D. Lear, H. C. Fry, M. J. Therien, J. K. Blasie, F. A. Walker, and W. F. DeGrado, De Novo Design and Molecular Assembly of a Transmembrane Diporphyrin-Binding Protein Complex, J. Am. Chem. Soc. 132, 15516-15518 (2010).
  15. Kraya, R. A., D. A. Bonnell, Determining the Electronic Properties of Individual Nanointerfaces by Combining Intermittent AFM Imaging and Contact Spectroscopy, IEEE Transactions on Nanotechnology 9, 741-744 (2010).
  16. Kraya, R., L. Y. Kraya , D. A. Bonnell, Orientation Controlled Schottky Barrier Formation at Au Nanoparticle-SrTiO3 Interfaces, Nano Letters 10, 1224-1228 (2010).
  17. Krieger, C. C., N. Bhasin, M. Tewari, A. E. X. Brown, D. Safer, H. L. Sweeney and D. E. Discher, Exon-Skipped Dystrophins for Treatment of Duchenne Muscular Dystrophy:  Mass Spectrometry Mapping of Most Exons and Cooperative Domain Designs Based on Single Molecule Mechanics.  Cytoskeleton 67, 796–807 (2010).
  18. Krishnan, V., A. Tronin, J. Strzalka, H.C. Fry, M.J. Therien, and J.K. Blasie. Control of the Orientational Order and Nonlinear Optical Response of the Push-Pull Chromophore RuPZn via Specific Incorporation into Densely-Packed Monolayer Ensembles of an Amphiphilic 4-Helix Bundle Peptide: Characterization of the Cofactor-Peptide Complex in Monolayer Ensembles.  J. Am. Chem. Soc. 132, 11083–11092 (2010).
  19. Krishnan, V., J. Strzalka, J. Liu, C. Liu, I. Kuzmenko, T. Gog, and J.K. Blasie. Interferometric Enhancement of X-ray Reflectivity from Unperturbed Langmuir Monolayers of Amphiphiles at the Liquid-Gas Interface.  Phys. Rev. E. 81, 021604 (2010)
  20. Lee, M. H., and D. Lee, Elastic Instability of Polymer-Shelled Bubbles Formed From Air-in-Oil-in-Water Compound Bubbles, Soft Matter 6, 4326-4330 (2010).
  21. Lee, M. H., V. Prasad, and D. Lee, Microfluidic Fabrication of Stable Nanoparticle-Shelled Bubbles, Langmuir 26, 2227-2230 (2010).
  22. Liu, J., D.S. Grierson, J. Notbohm, S. Li, S.D. O’Connor, K.T. Turner, R.W. Carpick, P. Jaroenapibal, A.V. Sumant, J.A. Carlisle, N. Neelakantan & N. Moldovan, Preventing Nanoscale Wear of Atomic Force Microscopy through the Use of Monolithic Ultrananocrystalline Diamond Probes, Small 6, 1140-1149 (2010).
  23. Lu, Y., B.R. Goldsmith, D.R. Strachan, J. Lim, Z. Luo, A.T. C. Johnson, Graphene nanoconstriction field effect transistor, Small 23, 2748 – 2754 (2010).
  24. McConnell, M. D., Y. Liu, A. P. Nowak, S. Pilch, J. G. Masters, and R. J. Composto. Bacterial plaque retention on oral hard materials: Effect of surface roughness, surface composition and physisorbed polycarboxylate. Journal of Biomaterials Research. 2010, 92A: 1518-1527.
  25. Merchant, C., K. Healey, M. Wanunu, V. Ray, N. Peterman, J. Bartel, M. Fischbein, K. Venta, Z. Luo, A.T. C. Johnson, and M. Drndic, DNA Translocation through Graphene Nanopores, Nano Letters 10, 2915 – 2921 (2010).
  26. Park, J.H., Y. Sun, Y.E. Goldman, and R.J. Composto. Self-Assembled Charged Hydrogels Con-trol the Alignment of Filamentous Actin. Soft Matter. 2010, 6: 915-921 .
  27. Rajagopal, K., A. Mahmud, D.A. Christian, J.D. Pajerowski, A.E.X. Brown, S.M. Loverde, and D.E. Discher.  Curvature-Coupled Hydration of Semicrystalline Polymer Amphiphiles Yields flexible Worm Micelles but Favors Rigid Vesicles: Polycaprolactone-Based Block Copolymers, Macromolecules 43, 9736–9746 (2010).
  28. Riley, C. K., E.A. Muller, B.E. Feldman, C.M. Cross, K.L. van Aken, D.E. Johnston, Y. Lu, A.T. C. Johnson, J.C. de Paula, and W.F. Smith, Effects of O2, Xe, and Gating on the Photoconductivity and Persistent Photoconductivity of Porphyrin Nanorods, J. Phys. Chem. C, 114,19227–19233 (2010).
  29. Robbins, G. P., R. L. Saunders, J. B. Haun, J. Rawson, M. J. Therien, and D. A. Hammer, Tunable Leuko-polymersomes that Adhere Specifically to Inflammatory Markers, Langmuir 26, 14089–14096 (2010).
  30. Saven, J. G., Computational Protein Design: Advances in the Design and Redesign of Biomolecular Nanostructures. Current Opinion in Colloid and Interface Science 15, 13-17 (2010).
  31. Schroeder III, H.W., H.Shuman,  E.L.F Holzbaur, and Y. E. Goldman  Motor Number Controls Cargo Switching at Actin-Microtubule Intersections in Vitro.  Current Biology 20,687-696 (2010).
  32. Singh-Rachford, T. N., A. Nayak, M. L. Muro-Small, S. Goeb, M. J. Therien, and F. N. Castellano, Supermolecular-Chromophore-Sensitized Near-Infrared-to-Visible Photon Upconversion, J. Am. Chem. Soc. 132, 14203–14211 (2010).
  33. Sun, Y., O. Sato, F. Ruhnow, M. E. Arsenault, M. Ikebe, M. and Y. E. Goldman, Single Molecule Stepping and Structural Dynamics of Myosin X. Nat. Struct. and Mol., Biol. 17, 485-491, (2010).
  34. Tettey, K. E., M. Q. Yee, D. Lee, Layer-by-Layer Assembly of Charged Particles in Non-Polar Media, Langmuir 26, 9974-9980 (2010).
  35. Tettey, K. E., M. Q. Yee, D. Lee, Photocatalytic and Conductive MWCNT/TiO2 Nanocomposite Thin Films, ACS Applied Materials and Interfaces 2, 2646-2652 (2010).
  36. Walczak A.M., G. Tkacik, et al. Optimizing Information Flow in Small Genetic Networks II: Feed Forward Interactions. Phys Rev E. 81, 041905 (2010).
  37. Zemel, A., F.Rehfeldt, A.E.X. Brown, D.E. Discher, and S.A. Safran.  Optimal Matrix Rigidity in the Self-Polarization of Stem Cells. Nature Physics. 6, 468-473 (2010).
  1. Bonnell, D. A., S. V. Kalinin, , A. Kholkin, and A.  Gruverman. Piezoresponse Force Microscopy:  a window into electromechanical behavior at the nanoscale. Materials Research Society Bulletin, 2009.
  2. Dan, Y., Y. Lu, N.J. Kybert, Z. Luo, and A.T. Charlie Johnson, Intrinsic response of graphene vapor sensors, Nano Letters 2009, 9, 1472 – 1475.
  3. Datta, S.S., D.R. Strachan, and A.T. Charlie Johnson, Gate coupling to nanoscale electronics, Physical Review B 2009, 79, 205404.
  4. Discher, D.E., D.M. Mooney, and P. Zandstra. Growth Factors, Matrices, and Forces Combine and Control Stem Cells. Science. 2009, 324: 1673-1677.
  5. Duncan, T. V. and S. -J. Park. A New Family of Color-Tunable Light-Emitting Polymers with High Quantum Yields via the Controlled Oxidation of MEH-PPV. J. Phys. Chem B. 2009, 113: 13216.
  1. Butts C., Swift J., Kang S.-G., Di Costanzo L., Christianson D.W., Saven J.G., Dmochowski I.J., Designed ferritin biotemplate for noble metal nanoparticle synthesis, J. Am. Chem. Soc., in preparation.
  2. Chakraborty, A.K., Aizenberg, J., Barron, A.E., Dill, K.A., Glotzer, S.C., Goldman, Y.E., Greenbaum, E., Kao, W.J., Needham, D., Parsegian, V.A., Rudolph, A., Safinya, C. R., Stevens, C.F. and Weitz, D.A., Inspired by Biology: From Molecules to Materials to Machines, National Research Council, National Academies Press, 2008.
  3. Christian N. A., Benencia F., Milone M. Li C., G., Frail P. R., Therien M. J., Coukos G., and Hammer D. A. In Vivo Dendritic Cell Tracking Using Fluorescence Lifetime Imaging and Near-Infrared Emissive Polymersomes, , Blood.  Submitted.
  4. Hammer D. A., Robbins G. R., Lin J. J., L. Smith A., Ghoroghchian P. P., Therien M. J., and Bates F. S..  Leuko-Polymersomes, Faraday Discuss. (2008) DOI: 10.1039/b717821b
  5. Kang Y. K., Zheng J., Rubtsov I. V., Beratan D. N., and Therien M. J., Orientational Dependence of Cofacial Porphyrin-Quinone Electronic Interactions within the Strong Coupling Regime, J. Am. Chem. Soc.  Submitted.
  6. Nelson P. C. Biological Physics: Energy, Information, Life Updated edition. W. H. Freeman and Co.  (2008).
  7. Schrlau M, Falls, E., M., Ziober, B., L., and Bau, H. H., 2008, Carbon Nanopipettes for Cell Probes and Intracellular Injection, Nanotechnology, 19, 015101 (4p), doi:10.1088/0957-4484/19/01/015101.
  1. Duncan T. V., Ishizuka T., and Therien M. J., Molecular Engineering of Intensely Near-Infrared Absorbing Excited-States in Highly Conjugated Oligo(Porphinato)Zinc-(Polypyridyl)Metal(II) Supermolecules, J. Am. Chem. Soc. 129, 9691-9703, 2007.
  2. Duncan T. V., Song K., Hung S.-T., Miloradovic I., Persoons A., Verbiest T., Therien M. J., and Clays K. Molecular Symmetry and Solution Phase Structure Interrogated by Hyper-Raleigh Depolarization Measurements: Insights for Elaborating Highly Hyperpolarizable D2 –Symmetric Chromophores, Angew. Chemie, Int. Ed. 47(16), 2978-2981, 2007.
  3. Frail P. R., Susumu K., Huynh M., Fong J., Kikkawa J. M., and Therien M. J., Amorphous Solids of Sterically Unencumbered, Low Molecular Weight Ethyne-Bridged (Porphinato)zinc(II) Oligomers Manifest Extremely High Dark Electrical Conductivities, Chem. Mater. 2007, 19, 6062-6064.
  4. Garcia HG, Grayson P, Han L, Inamdar M, Kondev J, Nelson PC, Phillips R, Widom J, Wiggins PA: Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity.  Biopolymers  85:115-130, 2007.
  5. Johnston D. E., Strachan D. R., Guiton B. S., Davies P. K., Bonnell D. A., and Johnson A. T., “High Quality Nanogap Electrodes for Electronic Transport Measurements of Single Molecules.” Technical Proceedings of the 2007 NSTI Nanotechnology Conference and Trade Show, Volume 1, pages 562-565 (2007).
  6. Kang Y. K., Duncan T. V., and Therien M. J., A Temperature-Dependent Mechanistic Transition for Photoinduced Electron Transfer Modulated by Excited-State Vibrational Relaxation Dynamics, J. Phys. Chem. B. 2007, 111, 6829-6838. 
  7. Lee M.H., Boettiger D., Ducheyne P., Composto R.J. "Self-assembled monolayers of omega functional alkylsilanes: A platform for understanding cellular adhesion at the molecular level,” Silanes & Other Coupling Agents, vol. 4., (ed. K.L.Mittal) Brill Academic Publishers, Leiden vol. 4, pp 1-16, 2007.
  8. Nelson’s NBIC work was profiled in: B. Maher. Physics in the cell: Spring theory. Nature 448: 984-986 (2007).
  9. Nelson’s NBIC work was profiled in: J. Liphardt. The great hunt for extra compliance. Biophys. J. 93: 4099 (2007).
  10. Nikiforov MP, Isakovic AF, Bonnell DA Atomic Structure and Charge-Density Waves of Blue Bronze K0.3MoO3 (20(1)Over-Bar) By Variable-Temperature Scanning Tunneling Microscopy. Phys Rev B 76 (2007) 033104
  11. Sanchez-Gaytan, B. L.; Cui, W; Kim, Y; Mendez-Polanco, M. A.; Duncan, T. V.; Fryd, M.; Wayland, B. B.; Park, S. -J. Interfacial Assembly of Nanoparticles in Discrete Block-Copolymer Aggregates, Angew. Chem. Int. Ed., 2007, 46, 9235.
  12. Secchi A.G., Grigoriou V., Shapiro I. M., Cavalcanti-Adam E. A., Composto R. J., Ducheyne P., Adams C. S. RGDS Peptides Immobilized on Titanium Alloy Stimulate Bone Cell Attachment, Differentiation and Confer Resistance to Apoptosis, J Biomed. Mat. Res. 83A: 577-584, 2007.
  13. Tang X, Dmochowski IJ: Probing expression.  Chemical Biology, 2:B15, 2007.
  14. Tang X, Dmochowski IJ: Regulating gene expression with light-activated oligonucleotides.  Mol BioSystems  3:100-110, 2007.
  15. Wolpe PR: Ethical and social challenges of brain-computer interfaces. Virtual Mentor 9:128-131, 2007.
  16. Zhang L., Swift J., Butts C., Yerubandi V., Dmochowski I.J., Structure and activity of apoferritin-stabilized gold nanoparticles, J. Inorg. Biochem., Ed Stiefel Special Issue (2007), 101 (11) 1719-1729.
  17. Zou H, Strzalka J, Xu T, Tronin A, Blasie JK: 3-D structure and dynamics via molecular dynamics simulation of a de novo designed, amphiphilic heme protein maquette at soft interfaces.  J. Phys. Chem. B  111:1823-1833, 2007.
  18. Zou, H., Strzalka, J. Xu, T., Tronin, A. and Blasie, J.K. “3-D Structure and Dynamics via Molecular Dynamics Simulation of a de novo Designed, Amphiphilic Heme Protein Maquette at Soft Interfaces”.  J. Phys. Chem. B 111: 1823-1833, 2007.
  1. Bau H, Gogotsi Y, Megaridis CM, Bradley JC: Unraveling the behavior of liquids at the nanoscale.  J Fluid Engineering  128: 3-4, 2006.
  2. Agadjanian H, Weaver J, Dmochowski IJ, Kim J, Margalit R, Gray HB, Gross Z, Medina-Kauwe LK: Specific delivery of corroles to cells via noncovalent conjugates with viral proteins.  Pharmaceutical Res  23:367-377, 2006.
  3. Bronson J, Lee OS, Saven JG: Molecular dynamics simulation of a water soluble analog of the potassium channel KcsA.  Biophysical J  90:1156-63, 2006.
  4. Bunagan MR, Yang X, Saven JG, Gai F: Ultrafast folding of a computationally designed trp-cage mutant: trp2-cage.  J Phys Chem B  110:3759-63, 2006.
  5. Cochran FV, Wu SP, Wang W, Nanda V, Saven JG, Therien MJ, DeGrado WF: Computational de novo design and characterization of a four-helix bundle protein that selectively binds a nonbiological cofactor. J Am Chem Soc 128: 663, 2006.
  6. Ghoroghchian PP, Li G, Levine DH, Davis KP, Bates FS, Hammer DA, Therien MJ: Bioresorbable vesicles formed through spontaneous self-assembly of amphiphilic polyethyleneoxide-block-polycaprolactone.  Macromolecules  39:1673-75, 2006.
  7. Kim A, Schotland J: Self-consistent scattering theory for the radiative transport equation.  J Opt Soc Am A  23:596, 2006.
  8. Lee MH, Adams CS, Boettiger D, DeGrado WF, Shapiro IM, Composto RJ, Ducheyne P. Adhesion of MC3T3-E1 cells to RGD peptides of different flanking residues: Detachment strength and correlation with long-term cellular function. J Biomed Mat Res Pt A, in press. (Published OnLine Nov. 16th, 2006)
  9. Li DB, Strachan DR, Ferris JH, Bonnell DA: Polarization reorientation in ferroelectric pzt thin films with electron beams.  J Mat Res  21:935-940, 2006.
  10. Li L, Li Y, Yang Y, Yang G, Chen X, Hsaio BS, Chu B, Spanier JE, Li CY: Patterning polyethylene oligomers on carbon nanotubes using physical vapor deposition.  Nano Lett. 6:1007, 2006.
  11. Nanda V, DeGrado WF: Computational design of heterochiral peptides against a helical target. J Am Chem Soc 128:809-16, 2006.
  12. North B, Cristian L, Fu Stowell X, Lear JD, Saven JG, DeGrado WF: Characterization of a membrane protein motif, the ser zipper, using designed peptides.  J Mol Biol  359:930-9, 2006.
  13. Panasyuk G, Schotland J, Markel V: Radiative transport equation in rotated reference frames.  J Phys A  39:115, 2006.
  14. Park S, Saven JG: Simulation of pH-dependent edge strand rearrangement in human 2 microglobulin.  Protein Science  15:200-7, 2006.
  15. Pophristic V, Vemparala S, Ivanov I, Liu Z, Klein ML, DeGrado WF: Controlling the shape and flexibility of arylamides: a combined ab initio, ab initio molecular dynamics, and classical molecular dynamics study.  J Phys Chem B Condens Matter Mater Surf Interfaces Biophys  110:3517-3526, 2006.
  16. Ross JL, Shuman H, Holzbaur ELF, Goldman YE: Track switching and crossing by microtubule motors.  Biophys J  90:127a, 2006.
  17. Ross, JL, Wallace, K, Shuman, H, Goldman, Y.E. and Holzbaur, ELF. Processive Bidirectional Motion of Dynein-Dynactin Complexes in Vitro Nature Cell Biology, 8:562-570. 2006.
  18. Strachan D. R., Smith D. E., Fischbein M. D., Johnston D. E., Guiton B. S.,  Drndic M., Bonnell D. A., and Johnson A. T., “Clean Electromigrated Nanogaps Imaged by Transmission Electron Microscopy.” Nano Lett. 6, 441 (2006).
  19. Swift J, Wehbi WA, Kelly BD, Fu Stowell X, Saven JG, Dmochowski IJ: Design of functional ferritin-like proteins with hydrophobic cavities.  J. Am. Chem. Soc.  128:6611-6619, 2006.
  20. Syed, S., Snyder G.E., Franzini-Armstrong, C., Selvin, P.R., Goldman Y.E., Adaptability of Myosin V Studied by Simultaneous Detection of Position and Orientation. EMBO J. 25:1795-1803. 2006.
  21. Takagi Y, Homsher EE, Goldman YE, Shuman H: Force generation in single conventional actomyosin complexes under high dynamic load.  Biophys J  90:1295-1307, 2006.
  22. Tang X, Dmochowski IJ: Controlling RNA digestion by RNase H with a light-activated DNA hairpin.  Angew. Chem. Int. Ed  45:3523-3526, 2006.
  23. Tatko CD, Nanda V, Lear JD, DeGrado WF: Polar networks control oligomeric assembly in membranes.  J Am Chem Soc  128:4120-1, 2006.
  24. Toprak E, Enderlein J, Syed S, McKinney SA, Petschek RG, Ha T, Goldman YE, Selvin PR: Lever arm dynamics of myosin v.  Biophys J  90:429a, 2006.
  25. Toprak, E, Enderlein, J, Syed, S, McKinney, S.A. Petschek, R.G., Ha, T, Goldman, Y.E. and Selvin, P.R., 3-D Orientation and Position Imaging of Myosin V.  Proc. Nat. Acad. Sci.,103:6495-6499. 2006.
  26. Wang J, Chen Z, Corstjens PLAM, Mauk M, Bau HH: Disposable microfluidic cassette for DNA amplification and detection.  Lab on Chip  6:46-53, 2006.
  27. Wang Y, Dempsey GT, Qing H, Stapulionis R, Kirillov SV, Pan D, Knuddsen CR, Cooperman BS, Goldman YE: Single molecule fret and fluorescence polarization of ribosomes immobilized on a microscope slide.  Biophys J  90:466a, 2006.
  28. Wang, S., Querner, C., Emmons, T., Drndic, M. and Crouch, C.H., Fluorescence blinking statistics from CdSe core and core-shell nanorods, J. Phys. Chem. B 110 (46), 23221-23227, 2006.
  29. Wei Q, Seward GK, Hill PA, Patton B, Dimitrov I, Kuzma NN, Dmochowski IJ: Designing 129Xe NMR biosensors for matrix metalloproteinase detection.  J. Am. Chem. Soc.  128:13274-13283, 2006.
  30. Wolpe PR: Reasons scientists avoid thinking about ethics.  Cell  125:1023-1025, 2006.\
  31. Wu S, Reedy MC, Liu J, Goldman YE, Reedy MK, Taylor KA: Imaging of isometrically contracting insect flight muscle fibers rapidly frozen after imposing a rapid stretch.  Biophys J  90:286a, 2006.
  32. Zhao X, Cola A, Tersigni A, Quaranta F, Gallo E, Spanier JE, Nabet B: Optically modulated high-sensitivity heterostructure varactor.  IEEE Electron Dev. Lett.  27:710-712, 2006.
  1. Biswas P, Zou J, Saven JG: Statistical theory for protein ensembles with designed energy landscapes.  J Chem Phys. 123:154908, 2005.
  2. Chen Y, Li D, Lukes JR, Majumdar A: Monte carlo simulation of silicon nanowire thermal conductivity. J Heat Transfer 127:1129-37, 2005.
  3. Chen Y, Li D, Lukes JR, Ni Z, Chen M: Minimum superlattice thermal conductivity from molecular dynamics.  Physical Review B 72: 174302, 2005.
  4. Chen Z, Corstjens P.L.A.M., Zuiderwijk M, Wang J, Mauk MG, Bau HH, Abrams WR, Malamud D: Phosphor reporter particle-based disposable device for the rapid detection of HIV at the point of care.  No 0241 µTAS  Boston Massachusetts USA   October 9-­13th, 791-793, 2005.
  5. Chen Z, Wang J, Mauk MG, Bau HH, Davis C, Tong G, Winslow F, Abrams WR, Malamud D: On chip PCR amplification with integrated lateral flow detection.  No 0240 µTAS  Boston Massachusetts USA  October 9-­13th, 1297-1299, 2005.
  6. Cristian L, Nanda V, Lear JD, DeGrado WF: Synergistic interactions between aqueous and membrane domains of a designed protein determine its fold and stability. J Mol Biol 348: 1225-1233, 2005. (Addition/Correction)
  7. Drulis MK, Czopnik A, Drulis H, Spanier JE, Ganguly A, Barsoum MW: On the heat capacity of Ti3SiC2 and Ti3GeC2.  Mater Sci Eng B  119:155, 2005.
  8. Forkey JN, Quinlan ME, Goldman YE: Measurement of single macromolecule orientation by total internal reflection fluorescence polarization microscopy.  Biophys J  89:1261-1271, 2005.
  9. Ghoroghchian PP, Frail PR, Susumu K, Blessington D, Brannan AK, Bates FS, Chance B, Hammer DA, Therien MJ: NIR-emissive polymersomes: self-assembled soft matter for in vivo optical imaging.  Proc Natl Acad Sci USA  102:2922-2927, 2005.
  10. Ghoroghchian PP, Frail PR, Susumu K, Park TH, Wu SP, Uyeda HT, Hammer DA, Therien MJ: Broad spectral domain fluorescence wavelength modulation of visible and near infrared-emissive polymersomes.  J Am Chem Soc  127:15388-90, 2005.
  11. Goldman YE: Cooperative mechanisms in molecular motors.  Biophys J  88:21a, 2005.
  12. Johnston DE, Islam MF, Yodh AG, Johnson AT: Electronic devices based on purified carbon nanotubes grown by high pressure decomposition of carbon monoxide.  Nature Materials  4:589 – 592, 2005.
  13. Kalinin SV, Shao R, Bonnell DA: Local phenomena in oxides by advanced SPM.  J Am Ceram Soc  88:1077-1098, 2005.
  14. Kim B, Bau HH: Carbon nanotube-based devices and the study of liquid and particles transport through them.  No 0394 µTAS  Boston Massachusetts USA  October 9-13th, 2005.
  15. Kim BM, Murray T, Bau HH: The fabrication of integrated carbon pipes with sub micron diameters.  Nanotechnology  16:1317-20, 2005.
  16. Kim BM, Qian S, Bau HH: Filling carbon nanotubes with particles.  Nano Letters  5: 873-78, 2005.
  17. Lei X, Li D, Shao R, Bonnell DA: In-situ deposition/positioning of magnetic nanoparticles with ferroelectric nanolithography.  J Mat Res  20:712-718, 2005.
  18. Lytle D, Carney S, Schotland J, Wolf EA: Generalized optical theorem for reflection, transmission and extinction of optical power for electromagnetic fields.  Phys Rev E  71: 056610, 2005.
  19. Malamud D, Bau HH, Niedbala S, Corstjens P:  Point detection of pathogens in oral samples.  Adv Dent Res  18:12-16, 2005.
  20. Markel V, Schotland J: Multiple projection optical diffusion tomography with plane-wave illumination. Phys Med Bio 50:2351-64, 2005.
  21. Nanda V, Rosenblatt MM, Osyczka A, Kono H, Getahun Z, Dutton PL, Saven JG, DeGrado WF: De novo design of a redox active minimal rubredoxin mimic.  J Am Chem Soc  127:5804-05, 2005.
  22. Panasyuk G, Markel V, Schotland J: Superresolution and corrections to the diffusion approximation in optical tomography. App Phys Lett 87: 101111, 2005.
  23. Qi, D., Fischbein, M.D., Drndic, M. and Selmic, S., Efficient Polymer-Nanocrystal Quantum Dot Photodetectors, Applied Physics Letters 86 (8), p. 093103-1 to 093103-3, 2005; featured in the Virtual Journal of Nanoscale Science & Technology, 11 (9), 2005.
  24. Qian S, Bau HH: Magneto-hydrodynamic flow of redox electrolyte.  Physics of Fluids  17: 1-12, 2005.
  25. Qian S, Bau HH: Magneto-hydrodynamic stirrer for stationary and moving fluids, sensors and actuators.  B Chemical  106: 859-70, 2005.
  26. Qian S, Bau HH: Theoretical investigation of electroosmotic flows and chaotic stirring in rectangular cavities.  Applied Mathematical Modeling 29: 726-53, 2005.
  27. Qian S, Burger R, Bau HH: Analysis of sedimentation biodetectors.  Chemical Engineering Science  60:2585-98, 2005.
  28. Quinlan ME, Forkey JN, Goldman YE: Orientation of the myosin light chain region by single and multiple molecule total internal reflection fluorescence polarization microscopy.  Biophys J  89:1132-1142, 2005.
  29. Romero HE, Drndiç M: Coulomb blockade and hopping conduction in PbSe quantum dots.  Physical Review Letters 95:156801, 2005.
  30. Romero, H.E., and Drndic, M., Coulomb Blockade and Hopping Conductivity in PbSe Quantum Dots, Physical Review Letters 96, 156801, 2005.
  31. Rosenberg SA, Quinlan ME, Forkey JN, Goldman YE: Rotational motions of macromolecules by single molecule fluorescence microscopy.  Acc Chem Res  38:583-93, 2005.
  32. Shao R, Chisholm MF, Duscher G, Bonnell DA: Low-temperature resistance anomaly at SrTiO/sub 3/ grain boundaries: evidence for an interface-induced phase transition.  Physical Review Letters  95:197601/1-4, 2005.
  33. Snyder G, Syed S, Goldman YE, Selvin P: Polarization study sheds light on bent-leg model for myosin v motility.  Biophys J 88:502a, 2005.
  34. Spanier JE, Gupta S, Amer M, Barsoum MW: Vibrational properties of Mn+1AXn phases via first-order raman scattering.  Phys Rev B  71:012103, 2005.
  35. Staii C, Johnson AT, Shao R, Bonnell D: High frequency scanned gate microscopy and memory effect in carbon nanotube transistors.   Nano Letters  5:893-6, 2005.
  36. Staii C, Shao R, Pinto-Butcher NJ, Bonnell DA, Johnson A.T: Scanning conductance microscopy and high frequency scanning gate microscopy of carbon nanotubes and polyethylene based nanofibers.  Mat Res Soc Proc  v838E O8.9, 2005.
  37. Strachan D. R., Smith D. E., Johnston D. E., Park T.-H., Therien M. J., Bonnell D.A., and Johnson A. T., “Controlled Fabrication of Nano-gaps in Ambient Environment for Molecular Electronics.” Appl. Phys. Lett. 86, 043109 (2005).
  38. Susumu K, Duncan TV, Therien MJ: Potentiometric, electronic structural, and ground- and excited-state optical properties of conjugated bis[(porphinato)zinc(II)] compounds featuring proquinoidal spacer units.  Am Chem Soc  127:5186-95, 2005.
  39. Takagi Y, Goldman YE, Shuman HA: Markov process model to predict the mechanics and kinetics of single rabbit skeletal isometric actomyosin interactions. Biophys J  88:634a, 2005.
  40. Toprak E, Enderlein J, Mckinney SA, Syed S, Petschek RG, Ha T, Goldman YE, Selvin PR: Simultaneous position and orientation analysis using focused and defocused image analysis: application to quantum dots and myosin v.  Biophys J  88:664a, 2005.
  41. Vanzi F, Takagi Y, Shuman H, Cooperman BS, Goldman YE: Mechanical studies of single ribosome/mRNA complexes.  Biophys J  89:1909-19, 2005.
  42. Wang J, Chen Z, Mauk M, Hong KS, Li M, Yang S, Bau HH: Self-actuated thermo-responsive hydrogel valves for lab on a chip.  Biomedical Microdevices  7: 313-22, 2005.
  43. Wang J, Chen Z, Qian S, Bau HH: Thermally-actuated phase-change flow control for microfluidic systems.  Lab on Chip  5: 1277-85, 2005.
  44. Wang J, Mauk MG, Chen Z, Bau HH: A disposable microfluidic device for cell lysis and DNA isolation.  No 0345 µTAS  Boston Massachusetts USA  Editors: Jensen KF,  Han J, Harrison DJ, Voldman J October 9-13th, 289-291, 2005.
  45. Wang Z, Panasyuk G, Markel V, Schotland J: Experimental demonstration of an analytic method for image reconstruction in optical tomography with large data sets.  Opt Lett 30:3338, 2005.
  46. Wu SP, Lee I, Ghoroghchian PP, Frail PR, Zheng G, Glickson JD, Therien MJ: Near-infrared optical imaging of B16 melanoma cells via low-density lipoprotein-mediated uptake and delivery of high emission dipole strength Tris[(Porphinato)Zinc(II)] fluorophores.  Bioconjugate Chem 16:542-50, 2005.
  47. Yildiz A, Goldman YE, Selvin PR: Nanometer resolution of two different fluorophores and application to myosin v.  Biophys J  88:646a, 2005.
  48. Zhang TG, Zhao Y, Asselberghs I, Persons A, Clays K, Therien MJ: Design, synthesis, linear and nonlinear optical properties of conjugated (Porphinato)zinc(II)-based donor-acceptor chromophores featuring nitro-thiophenyl and nitro-oligothiophenyl electron accepting moieties.  J Am Chem Soc  127:9710-20, 2005.
  49. Zheng J, Kang YK, Therien MJ, Beratan DN: Generalized mulliken-hush analysis of electronic coupling in compressed π-stacked porphyrin-bridge-quinone systems.  J Am Chem Soc. 127:11303-310, 2005.
  50. Zysk A, Carney S, Schotland J: Eikonal method for calculation of coherence functions.  Phys Rev Lett 95:043904, 2005.
  1. Carney S, Frazin R, Bozhevolnyi S, Volkov V, Boltasseva A, Schotland J: Computational lens for the near-field.  Phys Rev Lett  92:163903-1--163903-4, 2004.
  2. Carney S, Schotland J, Wolf E:  A generalized optical theorem for reflection, transmission and extinction of optical power for scalar fields.  Phys Rev E  70:036611, 2004.
  3. Forkey JN, Keleti D, Shaw MA, Goldman YE: Lever arm angles in single-headed proteolytic fragments of myosin.  V Biophys J  86:572a, 2004.
  4. Goldman YE: Myosin motors: the original smart machines that conserve renewable energy and balance the budget.  Biophys J  86:3a, 2004.
  5. Guy Z, Zheng Z, Butcher K, Shao R, Bonnell D: PFM of gallium nitride.  Proc Mat Res Soc Symp 2004.
  6. Lei X, Kalinin S, Hu Z, Bonnell DA: Ferroelectric lithography of multi-component nanostructures.  Ceramic Nanomaterials and Nanotechnology II: Ceramic Transactions Editors: DeGuire MR, Hu MZ, Gogotsi Y, Lu SW  48:39-51, 2004.
  7. Liu TY, Lazar DA, Dantzig JA, Goldman YE: Suppression of sliding filament velocity by n-benzyl-p-toluene sulphonamide depends on myosin concentration.  Biophys J  86:564a, 2004.
  8. Rosenberg SA, Takagi Y, Standiford DM, Emerson CP, Shuman H, Goldman YE: Actomyosin interaction of drosophila indirect flight muscle in the isometric feedback optical trap.  Biophys J  86:57a, 2004.
  9. Shao R, Bonnell DA: Probing electrical transport across oxide interfaces by noncontact atomic force microscopy.  Appl Phys Lett 85:4968-70, 2004.
  10. Shao R, Bonnell DA: Scanning probes of nonlinear properties in complex materials.  Jap J Appl Phys  43:4471-4476, 2004.
  11. Takagi Y, Homsher EE, Goldman YE, Shuman H: ATP and phosphate dependence of single rabbit skeletal actomyosin interactions under differing loads.  Biophys J  86:54a, 2004.
  12. Takagi Y, Shuman H, Goldman YE: Phosphate release and force generation in actomyosin.  J Muscle Res Cell Motil  25:250, 2004.
  13. Tregear RT, Reedy MC, Goldman YE, Taylor KA, Winkler H, Franzini-Armstrong C, Sasaki H, Lucaveche C, Reedy MK: Quick-frozen isometric contraction in insect flight muscle: how does a powerstroke look when filaments can’t slide?  Biophys J  86:183a, 2004.


NBIC-Support Patents

  1. Bourke, F. A., Walder, H., Fathi, Z., Stanton, I. N., and Therien, M. J., Up and Down Conversion Systems for Improved Solar Cell Performance or Other Energy Conversion, United States Patent Applied For, September 2010.
  2. Composto, R., A Multifunctional Flow Chamber for Biomaterial Surface Analysis, Biological Molecular Adhesion, and Microbe Attachment. (Y6049), Disclosure, August 2011
  3. Composto, R., Eckmann, D. E., GSL Biologix, LLC, GSL BioLogix has developed a dextran coating for medical devices used both inside and outside the human body, which can increase biocompatibility over existing materials. Potential applications of this coating include catheters, ventilation tubes, and implanted devices such as ventricular assist systems. Start Up Company, October 14th, 2011.
  4. Composto, R., Multifunctional Chitosan Grafted Surfaces and Uses Thereof, US Patent Filed  Reference: P-74778-USP (227048), February 7, 2012
  5. Composto, R., UPENN, CHOP, Drexel with Eqalix for the LCL graft for Small Diameter Vascular Graft, License Agreement, January 2012
  6. Discher, D. E., Discher, B. M., Won, Y.-Y., Lee, J. C.-M., Hammer, D. A., and Bates, F. S. Cross-linked polymersomes and related encapsulating membranes. US 7,867,512. (2011)
  7. Dmochowski, I.J., Hammer, D., Robbins, G., Jimbo, M., Swift, J., Laser and/or Light Induced Shape Change and Budding of Polymer Vesicles Loaded with Ferritin Proteins, Provisional U.S. patent application, filed 10/23/07.
  8. Dmochowski, I.J., Tang, X., Photocleavable oligonucleotide and uses thereof, US patent application, filed 11/27/07.
  9. Drndic, M., Qi, D., Selmic, S., Polymer-nanocrystal quantum dot composites and optoelectronic devices, Pending, Application number 11/348039, 2006.
  10. Fathi, Z., Walder, H., Bourke, F. A., Stanton, I. N., Ayres, J., Stecher, J. T., Therien, M. J.,  Toone, E., Gooden, D., Dewhirst, M., Herbert, J. A., Fels, D., Hansen, K. S., Adhesive Bonding Composition and Method of Use, United States Patent Applied May 2011.
  11. Fischbein, M., and Drndic, M., Beam Ablation Lithography, Pending, UPN0087, 2006.
  12. Fischbein, M., and Drndic, M., Nanocrystal quantum dot memory devices, Pending, Application number 11/329471, 2006.
  13. Fischbein, M., and Drndic, M., Nanogaps: methods and devices containing the same, Pending, Application number PCT/US06/10157.
  14. Fischbein, M., and Drndic, M., Nanostructure Assemblies, methods and devices thereof, Pending, Application number 60/715720, 2005.
  15. Johnson, A. T. C., Biomimetic Chemical Sensors Using Nanoelectronic Readout of Olfactory Receptors, Docket Number W5587/UPN-5498. Provisional Application filed 6/2010.
  16. Johnson, A. T. C., DNA-Graphene Chemical Sensors, Disclosure filed with Penn CTT Sept. 2009. Provisional US Patent Application filed January 2010.
  17. Johnson, A. T. C., Goldsmith, B. R., Mitala, J. J., and Discher, B. M. Biomimetic Chemical Sensors Using Nanoelectronic Readout Of Olfactory Receptors.  Application 61/359,414. Docket Number W5587/UPN-5498. Provisional Application filed 6/2010.
  18. Johnson, A. T. C., Goldsmith, B. R., Mitala, J. J., and Discher, B. M. Biomimetic Chemical Sensors Using Nanoelectronic Readout Of Olfactory Receptors.  Application 61/359,414. Docket Number W5587/UPN-5498. Provisional Application filed 6/2010.
  19. Johnson, A. T. C., Growth of Uniform Wafer-Size Graphene, Provisional Application #61/372,589 filed 8/2010
  20. Johnson, A. T. C., Method for Fabrication of a Graphene Nanoconstriction FET, Disclosure filed with Penn CTT Dec. 22, 2009. Provisional US Patent Application filed March 2010.
  21. Johnson, A. T. C., Multifunctional Chitosan Grafted Surfaces and Uses Thereof, Reference: P-74778-USP (227048) US Patent Application Filing February 7, 2012
  22. Kang, Y., Deria, P., Lee, O.-S., Saven, J.G.,  and Therien, M.J.,Organic Solvent Soluble Carbon Nanotubes, Patent Disclosure, University of Pennsylvania, March 2007.
  23. Kim, B. M., Riegelman, M., Gogotsi, Y., and Haim H. Bau, Nanotube-Based Devices for Biochemical Sensing and Processing and for Electron Microscopy of Chemical and Biological Interactions in Liquids and Gases, USA patent 7,964,159, awarded 6/21/2011.
  24. Lee, D., “Microfluidic-based generation of functional microbubbles for ultrasound imaging and therapy” with C. Sehgal (PCT patent filed)
  25. Lee, D., Roth, S, Imprinted Biomimetic Catalysts for Cellulose Hydrolysis. (U.S. patent filed 2010
  26. Lee. D., Mechanically Stable Nanoparticle Thin Film Coatings and Methods of Producing the Same (PCT patent filed; Application No: 61/388,323)
  27. Lener, M.B., D’Souza, J., Paina, T., Dailey, J., Goldsmith, B.R., Robinson, M.K., Johnson, A.T.C., Genetically Engineered Antibody-Carbon Nanotube Biosensor for Label-Free Detection of Prostate Cancer Biomarkers with Electronic Readout,  Provisional Application filed 2012.
  28. Lu, Y., Lener, M.B., Qi, Z., Mitala, J.J., Lim, J.H., Discher, B.M., Johnson, A.T., Protein-Graphene Nanohybrids for Optical and Chemical Detection, Provisional Application filed.  2012.
  29. Park, S.-J.; Chen, X. “Self-Assembled Nanoparticle-Oligonucleotide Hybrid Structures and Methods of Use Thereof”, Applied (Application number: 61371994)
  30. Pfeil, S., Cooperman, B., Smilasnky, Z., and Goldman, Y. E., Fabrication of Nanoscale Pores Using Colloidal Self Assembly and Sacrificial Post Fabrication.
  31. Pfeil, S., Cooperman, B., Smilasnky, Z., and Goldman, Y. E., Subwavelength Pores in a Conducting Film For Single-Molecule Spectroscopy via Self-Assembly.
  32. Saven, J. Disclosure filed: Peptides mimicking the activity of SDF-1alpha with enhanced angiogenic activity
  33. Strachan, D.R., Johnston, D.E., Guiton, B.S., Davies, P.K., and Johnson, A.T., “Parallel Fabrication of Controlled Electromigrated Nanogaps.” U.S. Patent Application 60/901,360 (submitted 2/13/2007), University of Pennsylvania, Disclosure #T4431 (filed 2/5/2007).
  34. Strachan, R., Johnston, D.E., Guiton, B. S.,  Davies, P.K., Bonnell, D.A., and Johnson, A.T., Part A: “Parallel Fabrication Of Nanogaps”, Part B: “Nanogap junctions made of brittle materials: From graphene to high-Tc superconductors, and beyond…” U.S. Patent Application 60/954,884 (submitted 8/9/2007), University of Pennsylvania Disclosure #T4510 (filed 4/8/2007).
  35. Vo-Dinh, T., Scaffidi, J. P., Chada, V. G. R,  Lauly, B., Zhang, Y.,  Gregas, M. K.,  Stanton, I. N.,  Stecher, J. T., Therien, M. J., Bourke, F. A., Fathi, Z.,  Ayres, J., Zhang, Z., Simmons, J. H., and Norton, S. J., Plasmon-Enhanced Photospectral Therapy, United States Patent Applied For, April 2010.
  36. Vo-Dinh, T., Scaffidi, J. P., Chada, V. G. R,  Lauly, B., Zhang, Y.,  Gregas, M. K.,  Stanton, I. N.,  Stecher, J. T., Therien, M. J., Bourke, F. A., Fathi, Z.,  Ayres, J., Zhang, Z., Simmons, J. H., and Norton, S. J., Up and Down Conversion Systems for Production of Emitted Light from Various Energy Sources Including Radio Frequency, Microwave Energy, and Magnetic Induction Sources for Upconversion, United States Patent Applied For, March 2010.

NBIC-Support Proceedings

  1. Gao, T., and Hu, H. H., Electrophoresis of Deformable Elastic Particles in Confined Geometries, 63rd Annual Meeting of the Division of Fluid Dynamics, American Physical Society, Long Beach, CA, November 21-23, 2010.
  2. Gao, T., H.H. Hu, and P. Ponte Castaneda. Rheology of a suspension of deformable elastic particles in a viscous shear flow. 16th US National Congress of Theoretical and Applied Mechanics, State College, PA. June 27-July 2, 2010.
  3. Ghosh, A; Qiu, J; DeGrado, WF; Hochstrasser, RM, "Tidal surge in the M2 proton channel, sensed by 2D IR spectroscopy", Proceedings Of The National Academy Of Sciences Of The United States Of America, vol. 108, (2011), p. 6115., "10.1073/pnas.110302710 "
  4. Hu, H.H. Simulation of elastic objects in viscous fluid flows, Proceedings of ICTAM 2008, in Adelaide, Australia.
  5. Hu, H.H. Simulations of Particulate Flows, Proceedings of Mini-workshop on Theory and Numerics of Solid-Fluid Interactions, Mathematisches Forschungsinstitut Oberwolfach, Oberwolfach, Germany, Nov. 26-30, 2007.
  6. Hu, H.H., Simulations of motion and deformation of elastic objects in viscous fluid flows, 60th Annual Meeting of the Division of Fluid Dynamics, American Physical Society, Salt Lake City, Utah, November 18-20, 2007.
  7. Hyungsub, C., Kaplan, S., Mody, C.C.M. and Roberts, J.A., Setting an Agenda for the Social Studies of Nanotechnology: A Summary of the Joint Wharton-Chemical Heritage Foundation Symposium on Social Studies of Nanotechnology, Wharton-Chemical Heritage Foundation joint publication (2008).
  8. Kamat, NP; Liao, ZZ; Moses, LE; Rawson, J; Therien, MJ; Dmochowski, IJ; Hammer, DA, "Sensing membrane stress with near IR-emissive porphyrins", Proceedings of The National Academy Of Sciences Of The United States Of America, vol. 108, (2011), p. 13984., "10.1073/pnas.110212510 "
  9. Krieger, CC; An, XL; Tang, HY; Mohandas, N; Speicher, DW; Discher, DE, "Cysteine shotgun-mass spectrometry (CS-MS) reveals dynamic sequence of protein structure changes within mutant and stressed cells", Proceedings Of The National Academy Of Sciences Of The United States Of America, vol. 108, (2011), p. 8269., "10.1073/pnas.101888710 "
  10. Lehmann, A. and Saven J.G., Computational Design of Four-Helix Bundle Proteins that Bind Nonbiological Cofactors, Biotechnol. Prog., 2008. 24, 74 -79. Proceedings of First International Conference on Biomolecular Engineering (ICBE).
  11. Miksa D, Irish E, Chen D, Composto RJ, Eckmann DM: Biomimetic surfaces via dextran immobilization; characterization and analysis. Mat Res Soc Symp Proc Vol 826E V2.2.1, 2004.
  12. Perrin, A. and Hu, H.H., DNS of sheared particulate flows with a 3D explicit finite-difference scheme, 60th Annual Meeting of the Division of Fluid Dynamics, American Physical Society, Salt Lake City, Utah, November 18-20, 2007.
  13. Rodd C, Santiago-Aviles JJ: Characterization of fibers electrospun from an organometallic tin precursor in different polymer binders” MRS Fall Conference Proceedings, Boston (2006)
  14. Shin, JW; Swift, J; Spinler, KR; Discher, DE, "Myosin-II inhibition and soft 2D matrix maximize multinucleation and cellular projections typical of platelet-producing megakaryocytes", Proceedings Of The National Academy Of Sciences Of The United States Of America, vol. 108, (2011), p. 11458., "10.1073/pnas.101747410 "
  15. Taku MA, Santiago-Aviles JJ: Electrical transport measurements in tin oxide microfibers.  MRS Fall Conference Proceedings - Boston, 2006
  16. Toworfe G, Composto RJ, Adams CS, Shapiro IM, Ducheyne P: Effect of surface activated polydimethyl-siloxane on fibronectin adsorption and cell function. Mat Res Soc Symp Proc Vol EXS-1 Materials Research Society: Pittsburg, PA F7.8.1, 2004.
  17. Uttayarat P, Lelkes PI, Composto RJ: Effect of nano to micro-scale surface topography on the orientation of endothelial cells. Mat Res Soc Symp Proc Vol 845 AA8.5.1, 2004.


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